Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04217 ATGATCACTTTGGCCGACTTTTACCACGTCATGACCGCAATGCTGCCACTGTATGTGGCCATGATACTCGCTTATGGTTCGGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCCGGCATAAACCGCTTCGTGGCTCTGTTTGCAGTCCCGCTACTCTCCTTCCACTTCATCGCGTCGAACAACCCCTACGAGATGAACTTCCGGTTCATCGCGGCGGACACGCTGCAGAAGATGATCGTGTTGGTGGTGCTGACGATCTGGAGCAACGTGAGCAAGAGGGGGAGTTTGGAGTGGACCATAACGCTCTTCTCCATCTCCACCCTCCCGAACACGCTGGTGATGGGCATTCCGTTACTAAAAGGAATGTACGGGGAGTTCTCGGGGAGTTTGATGGTCCAGATAGTGGTACTCCAGTGCATCATCTGGTACACCTTGATGTTGTTCATGTTCGAGTACAGAGGCGCCAGAATGTTGATCTCTGAGCAGTTTCCAGACACTGGCGCCACCATTGTCTCCATCCACGTGGACTCCGACGTCATGTCGCTTGATGGACGACAGCCCTTGGAAACCCAAACCCAAATCAAAGAGGACGGAAAGCTCCACGTCACCGTCAGAAAATCCAACGCCTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACTCCTCGCCCTTCCAACCTCACCAATGCAGAGATTTACTCGCTCCAATCCTCCACCAACCCTACTCCCAGAGCCTCCAGCTTCAACCACTCCGACTTTTACTCCATGATGGCCCCTCCTCGTAACTCCAACTTCGCTACCAATGACGTTTATGGCTTCTCTGCTTCCAGAGGACCCACTCCCAGACCTTCCAATTACGACGAAGATGCTTCCACCGCTGCTAATACTAACAACAACGACAAACCCAGACATCATTACCCTGCTCCTAACCCCGGCATCTTCTCCCCCGCCACGTATAAAAATGGTCCCAAGAAGCCCAATGGACACCCCCACGCCCACCCCAAACCAGAGGATTCAAGCAAGGAACTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCTGTTTCCGATGTGTTTGCCGGACATGAAAACGACCATAAAGAAGTTAAGCTCGCCGTGTCTCCCAAAAAAGTGGAGGGTAACAGAGACGGTCAAGAAGACTACCTTGAGAAAGACAGTTTTAGTTATGGAAACAGAGGGGCTGAGAATGAGCATGAAGGTGAGAAAGCTGGGAACGGAAATCAAAAAGCTATGCCTCCAACGAGTGTAATGACACGGCTTATTTTGATCATGGTGTGGAGGAAACTCATCAGAAACCCCAACACCTACTCCAGCCTGATCGGCTTAACTTGGTCACTTATTTCATTCAGGTGGAACGTTGAAATGCCTATGATTATTGCCAAGTCCATTTCCATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCCATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATGGTCGTTGGACTAAAAGGTGTTCTCTTACACGTTGCCATCGTTCAGGAAAATTTCAAGTCAGGGGAACACAATAAGGCCACACAACCCCTATTTGGGGCATTCCCTTCTCGAATCCTCAATCGAATATTGGAACCCCCACATCGAAGACGCTGCACTATCTTCATCGTCTCCATCCGTCAGGTTTGGAGATGTGCAGGATACTTCGAACTCACTGGAAAATGGAGGGGCACTGATGTTGCACTCAAGCGCGTTACTGATACATGTTTTGTTGGAAAGCCTTCAGAGCAAGAGCGCATGGTTTGTGTCTTCTTAATTGTTATGTTTTCCATTTTCTCTAACTCTCTTCCATGA 1941 0.4967 MITLADFYHVMTAMLPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKMIVLVVLTIWSNVSKRGSLEWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLISEQFPDTGATIVSIHVDSDVMSLDGRQPLETQTQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSTNPTPRASSFNHSDFYSMMAPPRNSNFATNDVYGFSASRGPTPRPSNYDEDASTAANTNNNDKPRHHYPAPNPGIFSPATYKNGPKKPNGHPHAHPKPEDSSKELHMFVWSSSASPVSDVFAGHENDHKEVKLAVSPKKVEGNRDGQEDYLEKDSFSYGNRGAENEHEGEKAGNGNQKAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVEMPMIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASMVVGLKGVLLHVAIVQENFKSGEHNKATQPLFGAFPSRILNRILEPPHRRRCTIFIVSIRQVWRCAGYFELTGKWRGTDVALKRVTDTCFVGKPSEQERMVCVFLIVMFSIFSNSLP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04217 646 NCBIfam auxin efflux carrier 1 547 IPR014024 -
Vian1g04217 646 MobiDBLite consensus disorder prediction 213 235 - -
Vian1g04217 646 MobiDBLite consensus disorder prediction 381 418 - -
Vian1g04217 646 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 545 - -
Vian1g04217 646 MobiDBLite consensus disorder prediction 381 425 - -
Vian1g04217 646 Pfam Membrane transport protein 9 566 IPR004776 GO:0016020|GO:0055085
Vian1g04217 646 MobiDBLite consensus disorder prediction 276 310 - -
Vian1g04217 646 MobiDBLite consensus disorder prediction 276 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04217 Vian-Chr1 65105590 65112010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04217 1 551 Organic Solute Cotransporters AT1G73590 67.288 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04217 K13947 - gmx:100786572 914.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04217 1 65105590 65112010 Vian1g04217 1 65105590 65112010 ECH
Vian1g04217 1 65105590 65112010 Vian8g01403 8 33275732 33278852 PCT