LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g03915	ATGTCAATTGCTGAGTTTGCTTTGAGTTCAGTTTGCGAAGAGAAGGGGCAATGGGAAGGGCAGCCGGGACATTGTTCTGGTGAGCCAATCTTGATTTACCTCACTGTGGATGGCGCTGTAACCCCAATGCGCGTGTTGGAGTCTGATTCCATTGCTTCGGTGAAACTGAGGATTCAACAGTGCAAAGGCTTCGTGGTGAAAAAGCAGAAGTTGGTTTTCGGTGGCAGAGAGCTAGCTCGGAGTGGCACTCTTATCAAGGAGTATGGTGTCGCTGACGGCAATGTTCTTCACATGGTTCTTCGCCTCTCTGATCTTCTTTTCATTGTTGTGAGGACCGTTTCTGGGAAGGAGTATGAGTTCCACATCGACAGACACCGAAATGTGGGTTATCTGAAACAACGCATTAGAAAAAAAGGGGAAGGTTTCATTGATCTTGAGGATGATCAAGAGCTTTTCTGCAATGGTGAGAAGCTCGATGATCAGAGTGTCTTCCATGACATATGCAAGAGTGAAGACGATGTGGTTCATTTGATAATTAAGAAATCGGCCAAGATTAGGACCACCCCGATTCAGAAGGATTTGAAGCTCTCCGTGAAGGCACCAGGTGAAGTAGTGAAACATAATAGGGACAAACATGTTCACATAGCAAATGTGCCACCTGACGTATGTTTTTGGTTGGAACCAATCATTCTGAATCCCAAGATCAATTTTTTTCCTTTCCTCTGGGATATGATAAACTCCACATTTGAAGGTTTGAAGAGAGGAAACGACCCTATTAGGTCCTCTGAGGGCACTGGAGGGACTTACTTCATGCAAGATTCAACAGGTCAGGAGTATGTTTCTGTTTTTAAGCCAATGGATGAGGAACCGATGGCTGTGAACAACCCAAGAGGTCTTCCGAGTTCAACCAATGGCGAAGGTTTGAAAATAGGGACAAAGGTTGGTGAAGGAGCCTTGAGGGAAGTTGCAGCATACTTGTTGGATCATCCACAGAGTGGGCCACGTCTGTTATCAGGTGAAGAAGTAGGCTTTTCTGGTGTTCCCCCTACTATTATGGTGCAGTGCCTACACAAAAAGTTTAACCACCCAAATGGGTTTTCTTGCTCCTCAAAAGATGTTAAGATCGGATCACTGCAGAAGTTCACTAGTAATGATGGTAACTGTGAGGACTTCGGACCCTGGGCTTTCCCAGTGGAGGAAGTGCATAAGATTACTGTGCTTGATATAAGATTGGCCAATGCAGACAGGCATGGTGGGAATATATTGATCAGAAAGGAAGCAGATGGCAAGATAAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGACTGGCTTTACTGGCCGCAAGCTCGTCAGCCTTACTCTCCTGAGACGATTGAATATATAAATTCTCTGGATGCTGAAAAAGACTTGGAACTTTTGAAATGTTATGGCTGGGATATGCCACTTCAGTGTGCTAGAACACTTCGCATTTCCACAATGTTGCTGAAGAAAGGTGTTGAGAGAGGCCTTACTCCCTACGAAATAGGAAGCATAATGTGTAGGGAAAATTTGAACAAGGAATCTGTGATTGAACAGATTATTGGGGAAGCCCAAGATTCCCTGCATCCAGGCATGGAGGAACCAGAATTTCTTGAAGCCATCTCTCAAAGCATGGATTCCCACCTTGAGAAGCTTGAAAAGTAG	1713	0.4448	MSIAEFALSSVCEEKGQWEGQPGHCSGEPILIYLTVDGAVTPMRVLESDSIASVKLRIQQCKGFVVKKQKLVFGGRELARSGTLIKEYGVADGNVLHMVLRLSDLLFIVVRTVSGKEYEFHIDRHRNVGYLKQRIRKKGEGFIDLEDDQELFCNGEKLDDQSVFHDICKSEDDVVHLIIKKSAKIRTTPIQKDLKLSVKAPGEVVKHNRDKHVHIANVPPDVCFWLEPIILNPKINFFPFLWDMINSTFEGLKRGNDPIRSSEGTGGTYFMQDSTGQEYVSVFKPMDEEPMAVNNPRGLPSSTNGEGLKIGTKVGEGALREVAAYLLDHPQSGPRLLSGEEVGFSGVPPTIMVQCLHKKFNHPNGFSCSSKDVKIGSLQKFTSNDGNCEDFGPWAFPVEEVHKITVLDIRLANADRHGGNILIRKEADGKIKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSPETIEYINSLDAEKDLELLKCYGWDMPLQCARTLRISTMLLKKGVERGLTPYEIGSIMCRENLNKESVIEQIIGEAQDSLHPGMEEPEFLEAISQSMDSHLEKLEK	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g03915	570	PANTHER	PHOSPHATIDYLINOSITOL 4-KINASE GAMMA	40	543	IPR044571	-
	Vian1g03915	570	ProSiteProfiles	Ubiquitin domain profile.	106	184	IPR000626	GO:0005515
	Vian1g03915	570	FunFam	Phosphatidylinositol 4-kinase gamma 4	27	106	-	-
	Vian1g03915	570	Pfam	Phosphatidylinositol 3- and 4-kinase	264	518	IPR000403	-
	Vian1g03915	570	SUPERFAMILY	Protein kinase-like (PK-like)	411	567	IPR011009	-
	Vian1g03915	570	SUPERFAMILY	Ubiquitin-like	34	103	IPR029071	-
	Vian1g03915	570	Gene3D	-	25	104	-	-
	Vian1g03915	570	Pfam	Ubiquitin family	36	102	IPR000626	GO:0005515
	Vian1g03915	570	Pfam	Ubiquitin family	108	181	IPR000626	GO:0005515
	Vian1g03915	570	Gene3D	-	106	183	-	-
	Vian1g03915	570	ProSiteProfiles	Ubiquitin domain profile.	32	101	IPR000626	GO:0005515
	Vian1g03915	570	ProSiteProfiles	Phosphatidylinositol 3- and 4-kinases catalytic domain profile.	255	552	IPR000403	-
	Vian1g03915	570	SMART	ubq_7	106	180	IPR000626	GO:0005515
	Vian1g03915	570	SMART	ubq_7	30	101	IPR000626	GO:0005515
	Vian1g03915	570	SUPERFAMILY	Ubiquitin-like	101	181	IPR029071	-
	Vian1g03915	570	CDD	Ubl_ubiquitin_like	108	178	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g03915	Vian-Chr1	62245387	62247577	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g03915	1	567	Acyl Lipid Metabolism Gene Families	AT5G24240	57.217	0.0	669

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g03915	-		-	gmx:100809172	1029.24

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vian10g01474	10	25031497	25033425	Vian1g03915	1	62245387	62247577	PCT