Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03891 ATGGGCGAAGAATTGGAGATTGGTGAAGGTGTGCAAGTGCAACATCAGAACAAGGATGATGGCTATTCACTAAACCCTGAATTCCGCGGAGTATTAAAACCCCAAGAATATGATGAAATTCCAGAAGATAAGAATATGGCTGAAGGAAGGGAACATTTGCATCCAGGTCTATTTTCTGATGGCGATGGTGGTGTCATGGTTGAAGAGTTAATGGTGAAAAGTTGTAACGGTTCTACCCTAGAAATCGGTACTTTGAACGGTCCAGGGTCTTTGCATGATAGCCGGAGTCCATGGCGGCATAGTTATCAGCCGTTTGCTGATTCGCGTGTGGGAAGGGATTGCATTATAGCTAGAAAGAGTGTTCAAGCTACATCTAGTGCTTGGGAAGATTTTGGGCCCATGTCTTCCCGAGACATATTAGCTAGAAAATCAGTCAATTATGATCATGGCAATGTCGTGCAGCACTTGTCCGCTGATGACCACACAGCTGAGCAAAAAGAGGATGAAGGAGATACTGGCGAAGTAATGCAAACAAAAACTGCACACAAATCCGGATTTTCAGAGTATTTTAGTAGAAGTACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCGTCTTCTAATGCTTTATATGTAGTGTCCAGAGATCAGAACCTCATGAAGTCTGGCATTGATATTCAGATGGATTCTAATGCATTCCCGAGCTCCGATTTAAAGATTGCAAAGTCTCCTCATAATGCTACTGTGCCAAGATTTGGTGGGTCTGACACTGATGGTGTGATTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGGAAGCAAAACAGAGCATTTAAGTATATTCAGAAAAATTGCAGACTTGGTTGGCGGTTTTCATTCTCAGGGAGTTGCAATGCACAATCTGTACCCTTCTTATATTAAATTGCTACCATCCAACCATGTTATGCATCTTGGGTTGCCAACTCAGAAACACAAATTAGATAGTGTTGCGAATTCTGAAGTTCTTCAGCTAGAGAATTCCCTTATTAGAAAAAGGCTGTCGGAGAAAGTAAAATCTTCCTCTCATAATTTGCGGATGAAGAAACAGAAATTCAGTGACAATGTTAGAGTTGCTGGTGATAAGAGTCGGTGCCCTCCTATGACTGACTTGTATCATCAAATTGCCAATGATGTTAAAGTCAATGCAGTGGTATCACAAGATCATTGCAATGAATACAAGGAAGATATCCAATTTTCTAAGCATAATATTCGGAGACCGTCTCGCCTCCCTCACATATCTAATGCAGGTCAATTCCAATTGACTTCCTCAAACGAAGGATTGGAAGAAGAATGGAAACATGCTTTGTCTGTACTTGGGGGGCAGGGTGGGGGATCAGTTGAGTTATTTAATCATTTTGATTCAGAAAGAGCACATACTGCTGCAATGTCTGCTCTTCGTGGTAGGATTCTTCCCTCAGCTTTCCTAGCAGAGTATCCTAAGGAAGCTGCATTTTGCCTTTGGATGCTGCATCCTGAACCATCATCACGTCCAACAATAAGGCAGTTAAGGAGTGAAGGGGAAGAAATGAATTGGCCTGCCGGGCAGCCTGAGAGTGGAGAGGCAGATAAGAAGATCCTGAACACATGCAAGGAGATTCTACAATCTGATGTGATAAATGGAACAAAAGTGGTGGACTGTGAGGAATTACTCTCAAGTCTTAACCAATATGATGCAGAATCAGAATTGCTATTGCATTTCCTCATCTCTCTGAAAGAGCAGAAACACGTGGATGCCCACAAATTGACTGAGGAAATCAGATGCATGGAATCAGATATAAAAGAGGTGGAAAGAAGGCATGATTTGAGACTATCCTTGGCTTCCTCGAGCTTGAAGAACAACTCATCCTGTGGAATAGAGGGTGTATCTCTTCTCAAAGAAGCTTCAAGTGCAGAAATATTACCACCAGTATACACAGTTTCTAAAGAAAATGAACTGAGACTGATGAAAAATATGTGCCTACTTGAAAATGCTTACTTTTCTACGAGATCTACAATTAAGCTTCCTGGAACAGAAACAGCAACCCGCCCAGATAAAGATGTGCTGAGAAATTCTGACAAGTTCTGTGTAGCTCAAAAAGAAATGGAAAAACATACAGATACTTTAGGAGCTTTCTTTGACGGTTTGTGCAAGTATGCGCGTTATCAAAAGTTTGAAGTGCGGGGCATACTAAGAACTGCTGATTTTAACAATCCAGTAAATGTAATCTGTTCTCTGAGTTTTGATAGAGATGGAGACTACTTTGCTGCTGCTGGGATATCGAAGAAAATAAAAGTTTTTCAGTTCGATGCAATTTTCAATAACTCTGTCGACATCCATTATCCTGTAGTTGAGATGGTAAACAGATCAAGGCTAAGTTGTGTTTGCTGGAATAGCTACGTCCAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTTAAGCTATGGGATGCCAATACAGGTCAAGAGTTTTCTCGACTCACCGAACATGAAAAGAGGTCCTGGTCTGTTGATTTCTCTATTGTATGCCCTACTAAATTTGCCAGTGGGAGTGATGACTGCTCTTTGAAACTGTGGAGTATCAATGAGTTCTCTGCTCATTCATCTCATATGCTGGCCTTTGGATCCGCGGATAATTCGACTTATTGCTATGATCTTCGCTTTCTTAGAACCCCTTGGTGTGTGTTGAGTGGCCATCGTAAATCTGTAAGTTTTGTCAAATTCTTGGACTCTGAAACACTAGTTTCTGCATCAACCGATAATACCTTGAAGATCTGGGATCTCAACAGAACCTCTCCTGTGGGTCGGTCAACTAGTGCTTGCAGCTTAACTCTGACTGGACATACCAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAACATGTGGTTCAGAAACAAATGAGGTCTATGCCTATTATAAATCTTTTCCCATGCCAGTCATTTCGCACAAGTTCGGGTCCATTGATCCTGTTTCTGGTAAAGAGACTGATGATGACTATAGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACATGCTTATTGCAGCTAATACAAGTGGATGTATAAAAGTTTTACAGATGATTTGA 3129 0.412 MGEELEIGEGVQVQHQNKDDGYSLNPEFRGVLKPQEYDEIPEDKNMAEGREHLHPGLFSDGDGGVMVEELMVKSCNGSTLEIGTLNGPGSLHDSRSPWRHSYQPFADSRVGRDCIIARKSVQATSSAWEDFGPMSSRDILARKSVNYDHGNVVQHLSADDHTAEQKEDEGDTGEVMQTKTAHKSGFSEYFSRSTLKGKGIVCKGPSSNALYVVSRDQNLMKSGIDIQMDSNAFPSSDLKIAKSPHNATVPRFGGSDTDGVILREWLKSRHHKGSKTEHLSIFRKIADLVGGFHSQGVAMHNLYPSYIKLLPSNHVMHLGLPTQKHKLDSVANSEVLQLENSLIRKRLSEKVKSSSHNLRMKKQKFSDNVRVAGDKSRCPPMTDLYHQIANDVKVNAVVSQDHCNEYKEDIQFSKHNIRRPSRLPHISNAGQFQLTSSNEGLEEEWKHALSVLGGQGGGSVELFNHFDSERAHTAAMSALRGRILPSAFLAEYPKEAAFCLWMLHPEPSSRPTIRQLRSEGEEMNWPAGQPESGEADKKILNTCKEILQSDVINGTKVVDCEELLSSLNQYDAESELLLHFLISLKEQKHVDAHKLTEEIRCMESDIKEVERRHDLRLSLASSSLKNNSSCGIEGVSLLKEASSAEILPPVYTVSKENELRLMKNMCLLENAYFSTRSTIKLPGTETATRPDKDVLRNSDKFCVAQKEMEKHTDTLGAFFDGLCKYARYQKFEVRGILRTADFNNPVNVICSLSFDRDGDYFAAAGISKKIKVFQFDAIFNNSVDIHYPVVEMVNRSRLSCVCWNSYVQNYLASTDYDGVVKLWDANTGQEFSRLTEHEKRSWSVDFSIVCPTKFASGSDDCSLKLWSINEFSAHSSHMLAFGSADNSTYCYDLRFLRTPWCVLSGHRKSVSFVKFLDSETLVSASTDNTLKIWDLNRTSPVGRSTSACSLTLTGHTNEKNFVGLSVADGYITCGSETNEVYAYYKSFPMPVISHKFGSIDPVSGKETDDDYSQFVSSVCWRGKSDMLIAANTSGCIKVLQMI 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03891 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 809 833 IPR001680 GO:0005515
Vian1g03891 1042 MobiDBLite consensus disorder prediction 159 176 - -
Vian1g03891 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 834 876 IPR001680 GO:0005515
Vian1g03891 1042 PANTHER PROTEIN SPA1-RELATED 2 542 1042 IPR044630 GO:0009640
Vian1g03891 1042 Coils Coil 592 612 - -
Vian1g03891 1042 PRINTS G protein beta WD-40 repeat signature 811 825 IPR020472 -
Vian1g03891 1042 PRINTS G protein beta WD-40 repeat signature 854 868 IPR020472 -
Vian1g03891 1042 PRINTS G protein beta WD-40 repeat signature 921 935 IPR020472 -
Vian1g03891 1042 ProSitePatterns Trp-Asp (WD) repeats signature. 811 825 IPR019775 -
Vian1g03891 1042 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 903 936 - -
Vian1g03891 1042 MobiDBLite consensus disorder prediction 159 179 - -
Vian1g03891 1042 ProSitePatterns Trp-Asp (WD) repeats signature. 921 935 IPR019775 -
Vian1g03891 1042 Gene3D - 718 1042 IPR015943 GO:0005515
Vian1g03891 1042 SMART WD40_4 896 934 IPR001680 GO:0005515
Vian1g03891 1042 SMART WD40_4 785 824 IPR001680 GO:0005515
Vian1g03891 1042 SMART WD40_4 945 984 IPR001680 GO:0005515
Vian1g03891 1042 SMART WD40_4 735 774 IPR001680 GO:0005515
Vian1g03891 1042 SMART WD40_4 827 867 IPR001680 GO:0005515
Vian1g03891 1042 SMART WD40_4 1001 1040 IPR001680 GO:0005515
Vian1g03891 1042 Pfam WD domain, G-beta repeat 902 934 IPR001680 GO:0005515
Vian1g03891 1042 ProSiteProfiles Trp-Asp (WD) repeats profile. 903 943 IPR001680 GO:0005515
Vian1g03891 1042 MobiDBLite consensus disorder prediction 1 25 - -
Vian1g03891 1042 SUPERFAMILY WD40 repeat-like 742 1039 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03891 Vian-Chr1 62050514 62058529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03891 808 935 Miscellaneous Gene Families AT5G08390 28.244 4.07e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03891 K16240 - gmx:100776980 1474.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00214 10 1873514 1882868 Vian1g03891 1 62050514 62058529 PCT