Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00214 ATGGATGAAGAATTGGTCGATGAGGCAACCCAATTGGTGGTTGCTGAGGATTCACAGCGCCAGAACAAAGATTCACCACACACGGAATGCCGAAAAATCTTACAATCTCAAGAAGCCCGTATTCCTGTTAAGCATGACTACTCGCAGTTACCACCTCGGGAATATGATGGCGTTCTACATGGTAAAAGTATAGTTGAAGGTATTGACCACGCAGATACATCACAGCATCCTGGTGTAAGCCTTTTTATGGATGACGGTGATGCTATGGTTGAAGAATTAACAGTAAAAAGTTACAATGGCTCAAGCTTGGATATTGGTACATCAAACAACCGAGGGCAAACGTATACTTGGCAGAACCATAGGCAGAATTTTTATCAGGTAGCAAGTAATTCCGGAATTGGAAATTCACTAAGTGATATCGGAACTAGAAACAGTGTCCAGGCCACATCCAGTGGTCGGGAGGATATCGGGTCCTCATCTTTCCCGGAGATACTGGCTAGAAAATCTCTCAGTGATGGCCAGAGCAATGTCATGGAGCACTTGGCAGCTGCTGAAAATAAAGAGGGTGCAGGTGATGTTCGTCAAGGAATACGGACAAAAATTATATCCCAATCGGGATTTGCGGAGTTTTTCATAAAAAATACACTGAAGGGTAAGGGTATTGTCTATAAAGGTCCGTCGTATGATGCCTTCTGTGCGCAGTCTAGAGAGCAAAACCGGATGAAGACTAACATTGGCACTGAACAGAATCAGATGAGGACCAGCATTGGCACAGAGCAGAATCAGAGGAGAACCGGCATTGGCACAGAGCAGAATCAGATGAGGAGAAGCATTGGCACAGAGAAGAATCAGATGAGGAGCAGCATTGCCACTGATCAGAATCAAATTAGGACCAGCATTAGCACAGATCAGAATCAGATAAAGATTGGCGTTGGCACAGATCAGAACCAGACGAAGACTAGCATTGGCACAGATCAGAATCAGATGAAGAATAACACTGGTACTGATCAGAAACAGATGAAGACTGGTATTGTTACTCACTTGAACTCTAATCAATCAGTGGGCTCTGGTTCCAAAACCCCGAAGTTTTCTTCTTATTTTGGTGCTATGGCTAGATCTGGCAAGTCTGAATGTAATGGTGTGACTTTGAGAGAATGGCTGAAACATGGGCACCATAAAACTAGCAAAGTGGAAAATTTGAATATATTTAGGAAGATTGTGGATTTGGTGGACAACTCTCACTCTCAGGGAGTTGCATTGCATAAGCTATGTCCATCTAATATTAAATTGTCGCCATCGAACCAAGTCATGTACCTTGGTTTACCTGTTCAAAAAAGAATGGTGGATGGTGTTGTAAATTCTGAAGTTGTCCACGTAGATAGTTCTGTTATTAGAAAAAGGCAGTCAGAGCAACTAACATCTCCCTCTCATGAAATGGGGTCAAAGAAGCAAAGGCTTAATGAGAATTTGAGGGTGACTGGTGGTGACTTGGGTCTTGAAACTGCAAGTGATAGGAAACTTCATAGTGGATCACTAGATATTTACAATGAATATGAGGAAGATACTCAATTTTCTAAATATAACATTGGAAGAATGTCTAGCATTCCTCATATATCTAATGCTGGTCAAATTCCATTGACTTCTTGTGAAAAATTTGAAAATAAATGGTACACAAGTCCCGAGGGAGGTTACACAACATCATCAAATATATACTGTCTTGGTGTCCTCCTTTTTGAGTTACTTGGTCATTTTGAGTCTGAAAGAACGCATATTGCAGCAATGTCTGATCTTCGACATAGGATTCTTCCTCCAATTTTCCTATCAGAAAACCCTAAGGAAGCTGGCTTTTGTCTTTGGCTGCTGCATCCAGAACCGTCATCACGTCCAACAACAAGGGAAATTCTTCAGTCTGAATTGATTAATGGATTGCAAGAGTTCTTTAGTGAGGAACTGTCATCAAGTATTGATCAAGAGGATGCAGAATCGGAATTGTTATTGCATTTCCTTGTTTTGCTAAAAGAGCAGAAGCAGAACAATGCTTTCAAACTGGCAGAGGAAATCAAGTGCTTGGAATCAGATATAGGAGAGGTGGAGAGGAGGCACGACTCAAGAAATTCCTTGGTTTCCTCTGGCTTGCAGAATGATTACTCTTGTCAGAAAGAGATTATGCCTCTTAGGATGGAATCTTCAAGTTTAGAAATGCTGCCCTCAATATCCCCAAACTCTAATTCAAATGAAGTGAGATTGATGAGAAATATATGCCATCTTGAAAGTGCTTATTTTTCCATGAGATCCAAACTTCAGCTTTCTGAAACAGATGCCTCAACTCACCCTGATAAAGATGTACTAAGAAATCGTGAGAACTGGAGCGTGGCCCAAAAAAGTGAGGAACAACCTAAAAGGAAAGATACTTTAGGGACATTCTTTGATGGTTTGTGCAAGTATGCACGATATTCCAGGTTTGAAGTGCGCGGTGTACTAAGAAATGCTGATTTTAACAATCCTGCAAATGTCATTTGCTCTTTAAGCTTTGATCGGGATGCAGATTACTTTGCCACGGCTGGGATATCTAAGAAAATAAAAATTTTTGAGTTTAGTGCACTTTGCAATGACTCTGTTGATATTCATTATCCTGTGGTTGAGATGTCAAACAGATCAAAAATCAGCTGTGTTTGCTGGAATAACTATATTAAAAACTATCTTGCGTCTACAGATTATGACGGCATAGTGAAGTTATGGGATGCAAGTACAGGTCAAGAATTTTCTCAATTCACTGAACATGAGAAAAGGGCGTGGTCTGTTGACTTCTCTGTAGTATGCCCCACGAAATTTGCCAGTGGAAGTGATGATTGCACTGTCAAGCTGTGGAGCATCAGTGAGAGGAACTGTTTAGGCACAATCAGGAATGTTGCTAATGTCTGCTGTGTTCAATTCTCTGCTCATTCCTCCCATTTGCTGGCCTTTGGATCTGCGGATTACTCAACATATTGCTATGATCTTCGCAATCTTAGAAGTCCCTGGTGTATATTGGCTGGCCATCGTAAGGCCGTGAGCTATGTCAAATTCTTGGACTCTGAAACACTTGTTTCTGCCTCTACTGATAATACATTGAAGATCTGGGATCTCAATAAAACCTCTCCTGTGGGTGCATCCACTAATGCTTGCAGCCTAACCCTGTCAGGCCACACCAACGAAAAGAATTTTGTGGGTCTGTCAGTGGCTGATGGATATATAGCATGTGGTTCAGAAACAAATGAGGTTTATTCCTACTATAGATCGCTTCCCATGCCAATCACTTCCCACAAATTTGGGTCCATTGATCCCATTTCTGGTAAAGACACAGAGGATGACAATGGACAGTTTGTTTCAAGTGTGTGCTGGAGAGGGAATTCCGACATGCTTATTGCAGCCAATTCAAGTGGATGTGTGAAAGTGTTACAGATGGTTTAA 3450 0.4145 MDEELVDEATQLVVAEDSQRQNKDSPHTECRKILQSQEARIPVKHDYSQLPPREYDGVLHGKSIVEGIDHADTSQHPGVSLFMDDGDAMVEELTVKSYNGSSLDIGTSNNRGQTYTWQNHRQNFYQVASNSGIGNSLSDIGTRNSVQATSSGREDIGSSSFPEILARKSLSDGQSNVMEHLAAAENKEGAGDVRQGIRTKIISQSGFAEFFIKNTLKGKGIVYKGPSYDAFCAQSREQNRMKTNIGTEQNQMRTSIGTEQNQRRTGIGTEQNQMRRSIGTEKNQMRSSIATDQNQIRTSISTDQNQIKIGVGTDQNQTKTSIGTDQNQMKNNTGTDQKQMKTGIVTHLNSNQSVGSGSKTPKFSSYFGAMARSGKSECNGVTLREWLKHGHHKTSKVENLNIFRKIVDLVDNSHSQGVALHKLCPSNIKLSPSNQVMYLGLPVQKRMVDGVVNSEVVHVDSSVIRKRQSEQLTSPSHEMGSKKQRLNENLRVTGGDLGLETASDRKLHSGSLDIYNEYEEDTQFSKYNIGRMSSIPHISNAGQIPLTSCEKFENKWYTSPEGGYTTSSNIYCLGVLLFELLGHFESERTHIAAMSDLRHRILPPIFLSENPKEAGFCLWLLHPEPSSRPTTREILQSELINGLQEFFSEELSSSIDQEDAESELLLHFLVLLKEQKQNNAFKLAEEIKCLESDIGEVERRHDSRNSLVSSGLQNDYSCQKEIMPLRMESSSLEMLPSISPNSNSNEVRLMRNICHLESAYFSMRSKLQLSETDASTHPDKDVLRNRENWSVAQKSEEQPKRKDTLGTFFDGLCKYARYSRFEVRGVLRNADFNNPANVICSLSFDRDADYFATAGISKKIKIFEFSALCNDSVDIHYPVVEMSNRSKISCVCWNNYIKNYLASTDYDGIVKLWDASTGQEFSQFTEHEKRAWSVDFSVVCPTKFASGSDDCTVKLWSISERNCLGTIRNVANVCCVQFSAHSSHLLAFGSADYSTYCYDLRNLRSPWCILAGHRKAVSYVKFLDSETLVSASTDNTLKIWDLNKTSPVGASTNACSLTLSGHTNEKNFVGLSVADGYIACGSETNEVYSYYRSLPMPITSHKFGSIDPISGKDTEDDNGQFVSSVCWRGNSDMLIAANSSGCVKVLQMV 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00214 1149 Pfam WD domain, G-beta repeat 919 957 IPR001680 GO:0005515
Vian10g00214 1149 Pfam WD domain, G-beta repeat 1009 1041 IPR001680 GO:0005515
Vian10g00214 1149 SUPERFAMILY WD40 repeat-like 832 1147 IPR036322 GO:0005515
Vian10g00214 1149 PANTHER PROTEIN SPA1-RELATED 2 8 1149 IPR044630 GO:0009640
Vian10g00214 1149 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1010 1043 - -
Vian10g00214 1149 ProSitePatterns Trp-Asp (WD) repeats signature. 901 915 IPR019775 -
Vian10g00214 1149 SUPERFAMILY Protein kinase-like (PK-like) 378 646 IPR011009 -
Vian10g00214 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 881 923 IPR001680 GO:0005515
Vian10g00214 1149 MobiDBLite consensus disorder prediction 251 303 - -
Vian10g00214 1149 Gene3D Transferase(Phosphotransferase) domain 1 378 647 - -
Vian10g00214 1149 SMART WD40_4 1099 1147 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 875 914 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 825 864 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 1052 1091 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 917 957 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 1003 1041 IPR001680 GO:0005515
Vian10g00214 1149 SMART WD40_4 960 999 IPR001680 GO:0005515
Vian10g00214 1149 Gene3D - 808 1149 IPR015943 GO:0005515
Vian10g00214 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 1010 1050 IPR001680 GO:0005515
Vian10g00214 1149 ProSiteProfiles Trp-Asp (WD) repeats profile. 924 966 IPR001680 GO:0005515
Vian10g00214 1149 PRINTS G protein beta WD-40 repeat signature 901 915 IPR020472 -
Vian10g00214 1149 PRINTS G protein beta WD-40 repeat signature 1028 1042 IPR020472 -
Vian10g00214 1149 PRINTS G protein beta WD-40 repeat signature 944 958 IPR020472 -
Vian10g00214 1149 Coils Coil 673 700 - -
Vian10g00214 1149 MobiDBLite consensus disorder prediction 315 337 - -
Vian10g00214 1149 ProSitePatterns Trp-Asp (WD) repeats signature. 1028 1042 IPR019775 -
Vian10g00214 1149 MobiDBLite consensus disorder prediction 1 28 - -
Vian10g00214 1149 FunFam E3 ubiquitin-protein ligase RFWD2 isoform X1 807 1149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00214 Vian-Chr10 1873514 1882868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00214 900 986 Miscellaneous Gene Families AT5G08390 31.111 8.22e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00214 K16240 - gmx:100784300 1967.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00214 10 1873514 1882868 Vian10g00214 10 1873514 1882868 ECH
Vian10g00214 10 1873514 1882868 Vian1g03891 1 62050514 62058529 PCT