Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03825 ATGGGGAACAGACGCTTCACTCAGGTAGCAATCAGCGACGAGGAGGACGAAACGCCTCCGCCGAAGCAGCAGTCCACCGACAGTGCCTCCGAGAACCGGTTGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGAGGATGAAGTGGAGAAGGAGAGCGAAAAGGAGGAAGATAAGAACAAGAAGAGAAAGATCAGAGACAAGCAGGACGGAAGATCTAACGAAGAAGAGGAACCGCCGCAGGAAGACGCTAAACCCATCGGTGAACCAATTAGGGTTTCTGGAAAGGGGAGAGGCCGGAAAAAACATTTTGATTCTTTTGAGTACGACGGAAACCAATACACGCTGGAAGATCCTATACTTCTCACACCTGAAGACAAAGACCAAAAGCCTTATGTGGCAATTATTAAGGACATTACGCAATCCATAAATGGCAGCATGATGGTCACAGGCCAGTGGTTCTATCGACCTGAGGAAGCTGAAAGGAAAGGTGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGATGTACCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAATTCGTAAGCTGCATCCTGGGTTTATTGTGCAAAAAGTGTATGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAACTTGTTCAGAAAACTCTTCAACGTTTGGGTGAACTACATGATATCGAGCCTGAAGAACCTGTTGCTGAACAGGAAGATCTGATGAAAAATAAAAGAATCTTGAGGAAAAAGAGCATTTCACCTCTCGATGTTTCAAAAGAGGAGGAAACATCTCGTAAGAGTGACCAATCTCTGAAACCTGAAACACCGGGGAGTTGTGCAAATAATGCTTCAGAACATTATCGTATACTAGTGGATTTTAATGCTCTAACTGGAGATACCCATCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATATTTAACTCTGATGACAGCACAAAGAAGGAAGACAAAGTAAATGACAATTCTGATGCAGTCAACAACGGGAACAATGACAAAAGTTCAGAAGTAGCAAATGAATGTAAAGACAAGGCTCAACAGAGTTCCAAGTCTTTTATCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCATCGCATGATACCTTTTCATCAGATTATCAGAAATATAATCAAAAGCTACGGCAATTAGTATTTAATCTCAAGAACAATGCAATCCTAGCACGCCGTCTATTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACTCCCAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAAACAAGAAAGAGCCTGATGAGTCACAACAAATGCAGATGACGGGTGCTCGATGCCGTAGATGCAGTGAGTGTAAGGTGGGCTTGAGGGATATAATCCACGCAGGCCATGGTGATCGATATCAGCTGGAATGTATTGCCTGTGGTCATTCCTGGTTTGCCTCCCGTGATGAAGTGTCTGACCTGACTTTAGATGCATCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCAAAATTTGAAGATGTTGAGAAGAAGCTGGTTAGTCCCCGTGAATCTGAAAAGAATGACATATTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGATTCCCAGAAATCGTTTGGCAAGTCTAGGAAAGATGAAAACGTCCAAGCTTCAAAACAGGTTGACTAG 1833 0.4315 MGNRRFTQVAISDEEDETPPPKQQSTDSASENRLKQQRKRKRMKLQEEEEEEDEVEKESEKEEDKNKKRKIRDKQDGRSNEEEEPPQEDAKPIGEPIRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSINGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPIRKLHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELHDIEPEEPVAEQEDLMKNKRILRKKSISPLDVSKEEETSRKSDQSLKPETPGSCANNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFIFNSDDSTKKEDKVNDNSDAVNNGNNDKSSEVANECKDKAQQSSKSFIWPDVAVPAVVALEKASHDTFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECIACGHSWFASRDEVSDLTLDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVLDSQKSFGKSRKDENVQASKQVD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03825 610 MobiDBLite consensus disorder prediction 1 106 - -
Vian1g03825 610 MobiDBLite consensus disorder prediction 593 610 - -
Vian1g03825 610 SUPERFAMILY Elongation factor TFIIS domain 2 334 468 IPR036575 GO:0006351
Vian1g03825 610 SMART BAH_4 118 237 IPR001025 GO:0003682
Vian1g03825 610 MobiDBLite consensus disorder prediction 293 319 - -
Vian1g03825 610 Gene3D - 83 254 IPR043151 -
Vian1g03825 610 ProSiteProfiles BAH domain profile. 118 237 IPR001025 GO:0003682
Vian1g03825 610 CDD BAH_plant_3 100 246 - -
Vian1g03825 610 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 604 - -
Vian1g03825 610 MobiDBLite consensus disorder prediction 588 610 - -
Vian1g03825 610 MobiDBLite consensus disorder prediction 293 307 - -
Vian1g03825 610 Gene3D - 319 469 IPR036575 GO:0006351
Vian1g03825 610 MobiDBLite consensus disorder prediction 359 384 - -
Vian1g03825 610 SMART mid_6 372 477 IPR003618 GO:0006351
Vian1g03825 610 ProSiteProfiles TFIIS central domain profile. 339 495 IPR003618 GO:0006351
Vian1g03825 610 Coils Coil 31 68 - -
Vian1g03825 610 MobiDBLite consensus disorder prediction 60 91 - -
Vian1g03825 610 Pfam Transcription factor S-II (TFIIS), central domain 335 486 IPR003618 GO:0006351
Vian1g03825 610 Pfam BAH domain 119 235 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03825 Vian-Chr1 61290077 61297280 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03825 - - vum:124835164 1029.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03825 1 61290077 61297280 Vian1g03825 1 61290077 61297280 ECH
Vian10g00271 10 2504188 2505250 Vian1g03825 1 61290077 61297280 PCT