Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03810 ATGGCTAAGGTTTACCCTCAGTTACCAACATCTCCTCAGACTCAGTGTCTCACATCCAAAAGAGAAACATACACTCTATGGTTGAAATCACTCGTCTTCCACTCCAATGGATGCACTGTCTATGACTCAAATGGTGACATCGTTTACAGAGTTGACAACTACGACAGAAAGGGTAGAAGAGAGGTTAATCTCATGGATCTACGAGGCAAAGTTCTCTGCACCATAAAGAAGAGATTACTAGCTCTTGGATGTTGGGAAGGACACAGATGCATCAGTTCAGATTTTGGCAGCCAGGAACAACCGTGGTTCCAAGTAAAAAGATGTAACCAAATGATCAAAGGGAAAGTAGCTTGCCAAATTTCTGTGGGGTGCCAAAAGTACAGCATAGTAAGAATCGGTGGCAAAGCAGAAGCATTTAGGATCGTGAACACCGATGGACAAATAGTTGCCGAGGCAAAGCAAAAACACTCACCCTCAGGTGTTGTACTGAGTAACGATGTTCTAACGTTGGATTTGGCTGCTGGCACGGATCATTCTCTCATAATGGCTTTAATCACAGTATATGGATTGATATGTGGTATAATGTAA 588 0.4269 MAKVYPQLPTSPQTQCLTSKRETYTLWLKSLVFHSNGCTVYDSNGDIVYRVDNYDRKGRREVNLMDLRGKVLCTIKKRLLALGCWEGHRCISSDFGSQEQPWFQVKRCNQMIKGKVACQISVGCQKYSIVRIGGKAEAFRIVNTDGQIVAEAKQKHSPSGVVLSNDVLTLDLAAGTDHSLIMALITVYGLICGIM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03810 195 Pfam LURP-one-related 12 187 IPR007612 -
Vian1g03810 195 PANTHER - 22 192 IPR007612 -
Vian1g03810 195 SUPERFAMILY Tubby C-terminal domain-like 13 192 IPR025659 -
Vian1g03810 195 Gene3D - 13 193 IPR038595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03810 Vian-Chr1 61179961 61180801 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03810 - - pvu:PHAVU_002G287800g 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03810 1 61179961 61180801 Vian1g03810 1 61179961 61180801 ECH
Vian10g00285 10 2622317 2623060 Vian1g03810 1 61179961 61180801 PCT