Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00290 ATGGGTAAAGCTCAACATAAAATATCTGAAGCAACCAATAGACAGATCAGCAATAGCACAAAATGCAATTCCAAACAGACCGTACAGAAATCAGATGAACATCCTGAATGGTTACCTGATGGTTGGATTGTGGACTCCAAAACTCGAAAAAGTGGTGCACATATGGGATGTGGGTATAAGTGTTACATTGACCCAACTGGACGCAAATTCTACTCCAAGCCAGAGGTGTTACGTTATATTAAGACTATAAACATCAACAGTCACAGTTCCAAGAAGGAAAAGATGCGCAAAAGCAATGATGCAGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGTTGGACAATAGAAGCCAAGGTTAGGAAGGGTGGTACTGGCAATAGGAAAGATCTGTTTTATATAGATCCGGTGAGTGGATATGTATTTCGCTCCAAGAAGGATGCACTACGCTATGTTAAGTCTGGTGATATAAGTTCGTGTGCGATTAAACCGTACAAGCAACAAATCCAAGATGAAGACAAAGTATCTAATGCAGATGCGAAGTCCACTATACAGGATTTACCACCTGGGCAGATGACAGAAGTCAAAATTAGGAAGGGCAGTAATGACAAAAGGATAGATCCGGATTGGGTCGAGAAGTCCCAAGTTGAGGATTTACCACCTGGGTGGATAACAGAAGCCAAGATTAGGAAGGGTGGTAGTGGCAAGAAGAAAGATCTGTTTTATTTAGATCCAGTGAGTGGATATGTATTTCGGTCCAAGAAGGATGCACTGCGCTATGTTAATTCTGGCGATATAGATAAGTGCGTGCTTAAACCTTATAAAAGAGGAATCCAAGATGAAGACGGAATAAGTCCATCATCTATTGGCAAAAGGCAGAAACTAACGCAGTCTGCAGCAAATCAACAGTTTTCTGTAGGTCAACCTGATGTGAAGAGCCAATCGTTAGAGCATGCAACTGCACACACTCCCGGAATGATGAAAACATTTGATTCAGATGATATGCTAGAAAAGAATCACAGCAACAGTAGTTTATCCAAAACCAAGGAGTCCAATGTGGCTCGCCGTTTTTCACGGAGACTTTCTCGGGCTGAACCTGACCAATTGACCTACGTGGCCAATGAACAGGCTCTTCAAGTTCCTAAAAGAAAGTTGGGAAAAAGTGTAAGTATTTTAGACACTGATTTGACAAATAAATCATCTCAGCAGCTGAGTGGTGTACTGGAAATTAAGCGTTCATATAAAGAGCAAGGAGAAGTGCTATTGAACTCAACAAAATCCAGAACCAAGGAAGAGAAACAAACTTTTTGTCGTTCTTCAAAAAGATTAGCTGGATTTCAACCCAAGCTGATGAGCAACTCTAGTTCCCAAAAAACATCTTATAAAAGTAAAAAGTTTAAAGGTGATGTCAAAGCAACCTTGCAGCAAAGTGATGGTCAGCCAGTTACGGAGTTTGCAGATCATGCATCAATAAATGGAGAGTCGTCAAATAAAGGCAGAAAACTTCCCGAAACCACACCCATAACTAGCAATCAACTGAAGAAATTTGATGGCGAAGAAATAAATAACGATGAGAAATCAGAACTTGATCATTCCTTTGCATTTCATTATTCTTGGTCTGACCCATGCTTGGAATTTGCAATTCAAACCCTCACAGGTGCATTACCAGTTGAAGATTCAACTGACAATGGACAAACCAGGGTTTCTGAAACTGATACATCTCCCAAAAATAAGTTGGTTGAGAATGTTACAGGAAGCAGCGGTGACAAAACCTCACGTGTAAATTCAAAGCAATCCAAGAACAAAAAAGAGCTTACAGTGTCAAGGCGGTTGTCAAAGCGACTTGCTGGCAATGAACCCGAGGTACTTCCTACTGAAAAAGCTGCCGAATTCGCCCCTCAAAAGTCCTGCAATGACAAACTGGCTGCTACTGCGAATTTAACTAATGGAGTGTGTGGGTATCATCCTGACAGGGAAGAATCCGAACTTGTTGTCCAGTCATCTGACAGGTTGAAAACATTATGTGGTGAATCATTGATCAAGAGTGAGAAGTCATATGATGCTCAAACGGTTCCCAATGAACAAATGCAGAGGTATGAAGATGAAAATGCCGATGATGAAAGATCGTATTCACAGTTCCCCACACCTTTTGGGGACTCCTGGTCGGATCCTTGCCTAGAATTTGCAATTAAGACTCTTTCAGGTGCTTTGCCAGTTGACGCACCAGCTGCGGACATTTTACCTGTTACTCCTGATGTTAGTGATCCCCCATATAAGGAGTCACTTCAGAGTATGGAGCAGAAGAGCATCAATGCAGAAACTCATGATAATCCCTACCAATCCCAGACCAAGAAAGAGTTTAATACTGTTTGCCACACATCAAAACAAGACCTGAACCAGCCCGAGGTGACAACCTACTCCACATCTTTTGGAAATGATCCAAAATTTGCAACTAGAGAGTCTTACAAGAATGAAGACAGTATAACCAGGAATTCTAACGAAAGAGAACCCCAACGTATTAAATCTGGGAACGCACTAGAAATTGATATAAACAAAACAATTCTTGAAGAAGAGCCACAACCTGAAACAATAAACTACGATAATTCTGACAGAGAATTCGGTGCTTCATTTATGGATTCTTGGTCAGATCCATGCCTAGAATTTGCATTTAATACTCTTTCAGGCTCAATACCAGTAGAGGAAAATATAACAATTCAAGCATGTTTCCAGGAACGTGCCCATAGCCATGGCCAAAGAGGGGGTTTCTCGACAGTCCCTGATTTTGGATTTTCCAGCATTTCTCATAGTGGTATCTCATTTCACAATAATATAGGGGAGGAATCCAAGTCAGTTCAACAGTCATCAGCGAGTTCTTCTTTCCTCCCCCAGGAAAAACAGGGCCTGGACGCTTTCTTCGGGGTTGATCCTCAAGAACAATATTTTCAGAATAATAATAATTTTCAGAGAAAGTGA 2973 0.412 MGKAQHKISEATNRQISNSTKCNSKQTVQKSDEHPEWLPDGWIVDSKTRKSGAHMGCGYKCYIDPTGRKFYSKPEVLRYIKTININSHSSKKEKMRKSNDAVEKSQVEDLPPGWTIEAKVRKGGTGNRKDLFYIDPVSGYVFRSKKDALRYVKSGDISSCAIKPYKQQIQDEDKVSNADAKSTIQDLPPGQMTEVKIRKGSNDKRIDPDWVEKSQVEDLPPGWITEAKIRKGGSGKKKDLFYLDPVSGYVFRSKKDALRYVNSGDIDKCVLKPYKRGIQDEDGISPSSIGKRQKLTQSAANQQFSVGQPDVKSQSLEHATAHTPGMMKTFDSDDMLEKNHSNSSLSKTKESNVARRFSRRLSRAEPDQLTYVANEQALQVPKRKLGKSVSILDTDLTNKSSQQLSGVLEIKRSYKEQGEVLLNSTKSRTKEEKQTFCRSSKRLAGFQPKLMSNSSSQKTSYKSKKFKGDVKATLQQSDGQPVTEFADHASINGESSNKGRKLPETTPITSNQLKKFDGEEINNDEKSELDHSFAFHYSWSDPCLEFAIQTLTGALPVEDSTDNGQTRVSETDTSPKNKLVENVTGSSGDKTSRVNSKQSKNKKELTVSRRLSKRLAGNEPEVLPTEKAAEFAPQKSCNDKLAATANLTNGVCGYHPDREESELVVQSSDRLKTLCGESLIKSEKSYDAQTVPNEQMQRYEDENADDERSYSQFPTPFGDSWSDPCLEFAIKTLSGALPVDAPAADILPVTPDVSDPPYKESLQSMEQKSINAETHDNPYQSQTKKEFNTVCHTSKQDLNQPEVTTYSTSFGNDPKFATRESYKNEDSITRNSNEREPQRIKSGNALEIDINKTILEEEPQPETINYDNSDREFGASFMDSWSDPCLEFAFNTLSGSIPVEENITIQACFQERAHSHGQRGGFSTVPDFGFSSISHSGISFHNNIGEESKSVQQSSASSSFLPQEKQGLDAFFGVDPQEQYFQNNNNFQRK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00290 990 MobiDBLite consensus disorder prediction 8 26 - -
Vian10g00290 990 MobiDBLite consensus disorder prediction 818 839 - -
Vian10g00290 990 MobiDBLite consensus disorder prediction 482 510 - -
Vian10g00290 990 MobiDBLite consensus disorder prediction 289 320 - -
Vian10g00290 990 PANTHER OS04G0193200 PROTEIN 16 175 IPR038945 -
Vian10g00290 990 MobiDBLite consensus disorder prediction 557 594 - -
Vian10g00290 990 SUPERFAMILY DNA-binding domain 109 163 IPR016177 GO:0003677
Vian10g00290 990 Gene3D - 103 167 - -
Vian10g00290 990 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 100 172 IPR001739 GO:0003677
Vian10g00290 990 MobiDBLite consensus disorder prediction 803 839 - -
Vian10g00290 990 Pfam Methyl-CpG binding domain 218 264 IPR001739 GO:0003677
Vian10g00290 990 Pfam Methyl-CpG binding domain 34 82 IPR001739 GO:0003677
Vian10g00290 990 Pfam Methyl-CpG binding domain 109 155 IPR001739 GO:0003677
Vian10g00290 990 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 209 281 IPR001739 GO:0003677
Vian10g00290 990 Gene3D - 168 307 - -
Vian10g00290 990 Gene3D - 1 102 - -
Vian10g00290 990 MobiDBLite consensus disorder prediction 557 608 - -
Vian10g00290 990 MobiDBLite consensus disorder prediction 280 356 - -
Vian10g00290 990 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 28 95 IPR001739 GO:0003677
Vian10g00290 990 SUPERFAMILY DNA-binding domain 32 86 IPR016177 GO:0003677
Vian10g00290 990 SUPERFAMILY DNA-binding domain 218 266 IPR016177 GO:0003677
Vian10g00290 990 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00290 Vian-Chr10 2664344 2673781 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00290 - - vra:106777576 1805.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00290 10 2664344 2673781 Vian1g03801 1 61053704 61059619 PCT