Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03798 ATGAGTCTCCCAAGAGGATTCTTCTTCCTCGTGGCTCTGTTATTCACCTTCACCACTGCTGCATATGCTGCAAGGTTTGATATCACAAACAGATGCCGCAACACTGTGTGGGCGGCGTCTGTGCCTGTTGGCGGTGGCAGACAATTAAACCCCGGGGATACCTGGTCCGTTGACGTGCCGGCAGGAACCACAGCGGCCCGCATTTGGGCCCGAACCGGTTGCAACTTCGACGGGTCGGGTCGGGGTGGATGTCAGACCGGAGACTGTGGTGGAGTCCTGCAATGCAGAGCATACGGTGCTCCTCCCAACACCCTAGCGGAATTCGCGCTGAACCAGTTCAACAATTTGGACTTCTTCGACATCTCCCTGGTCGACGGTTTCAACGTTCCCATGGAGTTTAGTCCAACGTCGAACGGATGCTCACGTGGCATATCATGCACTGCTGACATTAACGGACAGTGTCCCTCTCAGCTGAAGGCTCAAGGCGGTTGCAACAACCCATGCACCGTCTTCAGAACCAACGAATACTGTTGCAATTCCGGAAGCTGTTCTCCTACTGCTCTGTCCAAATTCTTCAAGGATAGGTGCCCCAATGCTTATAGTTATCCCAAAGATGATCAGACCAGCACCTTCACTTGCCCCGGCGGAACTAACTATAAGGTTGTCTTTTGCCCTTGA 678 0.5339 MSLPRGFFFLVALLFTFTTAAYAARFDITNRCRNTVWAASVPVGGGRQLNPGDTWSVDVPAGTTAARIWARTGCNFDGSGRGGCQTGDCGGVLQCRAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMEFSPTSNGCSRGISCTADINGQCPSQLKAQGGCNNPCTVFRTNEYCCNSGSCSPTALSKFFKDRCPNAYSYPKDDQTSTFTCPGGTNYKVVFCP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03798 225 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vian1g03798 225 Pfam Thaumatin family 30 225 IPR001938 -
Vian1g03798 225 SUPERFAMILY Osmotin, thaumatin-like protein 24 225 IPR037176 -
Vian1g03798 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Vian1g03798 225 FunFam Thaumatin I 24 225 - -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vian1g03798 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vian1g03798 225 Gene3D Thaumatin 24 225 IPR037176 -
Vian1g03798 225 SMART tha2 26 225 IPR001938 -
Vian1g03798 225 CDD TLP-P 26 225 - -
Vian1g03798 225 PANTHER OS03G0233200 PROTEIN 9 225 IPR001938 -
Vian1g03798 225 PIRSF PR5 3 225 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03798 Vian-Chr1 61038113 61038790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03798 7 225 Receptor kinase-like Gene Family AT5G38280 35.918 5.96e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03798 - - vra:106767605 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03798 1 61038113 61038790 Vian1g03798 1 61038113 61038790 ECH
Vian10g00292 10 2679333 2680010 Vian1g03798 1 61038113 61038790 PCT