Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00292 ATGGCAGTCACCAAAAGCCTCTCGTTGTTTCTCTTCGTCGCCATAAGCTGCACCGTCGCAGCCCAGGCAGCGACCTTCAACGTCACAAATAATTGCAACTTTACGGTATGGGCCGCCGCCGTGCCCGGTGGCGGCGTACGGCTGAACCCTAACGAGTCATGGAGCATCGACGTGGCGAACGGCACCACGGGAGGACGCATTTGGGGGCGAACAAACTGCACCTTCGACAACGCGGGACGCGGTAGTTGCTTAACCGGCGACTGCGACGGTCTTCTCGTGTGCAACAACACTTACGGTACACCCCCAAACACGCTGGTGGAATTCGCGCTGAACCAGTACAACAACCTCGACTTCTACGACATCTCCCTGGTAGATGGTTTCAACCTTCCGGTTCAGTTGAACCCGACATATAACTGCAGCAGCGTAAAATGCGCCGCCGACGTCATCGGAGATTGCCCCACTCAGCTGCAGGCTCCTGGCGGTTGTAACAACCCATGCACGGTTTTCAATACGACGGAGTACTGTTGTACCTCCGGTTCTTCGGGGTGCGGTCCCACCGATTATTCGAAGTATTTCAAGGAGAAGTGCCCAGATGCATACAGTTACCCTATGGATGATGCCACCAGCACATTCACTTGCAGGGGAGGATCCGATTATAGGGTTGTCTTTTGCCCTTAA 678 0.5501 MAVTKSLSLFLFVAISCTVAAQAATFNVTNNCNFTVWAAAVPGGGVRLNPNESWSIDVANGTTGGRIWGRTNCTFDNAGRGSCLTGDCDGLLVCNNTYGTPPNTLVEFALNQYNNLDFYDISLVDGFNLPVQLNPTYNCSSVKCAADVIGDCPTQLQAPGGCNNPCTVFNTTEYCCTSGSSGCGPTDYSKYFKEKCPDAYSYPMDDATSTFTCRGGSDYRVVFCP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 44 53 IPR001938 -
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vian10g00292 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vian10g00292 225 Gene3D Thaumatin 23 225 IPR037176 -
Vian10g00292 225 Pfam Thaumatin family 30 225 IPR001938 -
Vian10g00292 225 SUPERFAMILY Osmotin, thaumatin-like protein 23 225 IPR037176 -
Vian10g00292 225 PIRSF PR5 1 225 IPR001938 -
Vian10g00292 225 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Vian10g00292 225 ProSiteProfiles Thaumatin family profile. 23 225 IPR001938 -
Vian10g00292 225 SMART tha2 26 225 IPR001938 -
Vian10g00292 225 FunFam Thaumatin I 24 225 - -
Vian10g00292 225 PANTHER OS03G0233200 PROTEIN 10 225 IPR001938 -
Vian10g00292 225 ProSitePatterns Thaumatin family signature. 79 94 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00292 Vian-Chr10 2679333 2680010 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00292 6 225 Receptor kinase-like Gene Family AT5G38280 36.585 4.74e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00292 - - gmx:100037479 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00292 10 2679333 2680010 Vian1g03798 1 61038113 61038790 PCT