Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03489 ATGAAGTGCTTCTCTCTGTGCTTAGTCTCCTTTTGGGCTCTCCTCCCTCTCTGTTTGCTAAGTGTGTCATCCCAAAATATACCTGAGAGTGGTCAAAAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCTTATGATTCCTTTTGCTGGACAATTTCTGAAGATGAATTCTTACAAAGTGCTGAAATAGTTTCTGAACGTCTCAAGGCTCATGGATATGAGTTTGTCGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAAGGTGCCTATCCCGATTCTCTTGGATTTGACGTGATTGATGAATGGGGAAGGATGCTCCCGGACCCAGGAAGGTGGCCTTCTTCCACAGGTGGGAAGGGTTTCAAGGAAGTAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACTCAAGCTGTCAATGCAAACACCCCTATCTTAGATACAACAAAGGGAAGTGCATATCTAGAATCTGGTCGAGTTTGGCGTGCAAAAGACATAGCAATCCCAGAAAAGGCTTGTGCATGGATGCCTCACGGTTTCATGAGCGTAAATACAAAGTTAGCAGCTGGAAGAGCTTTTTTGAAGTCCCTGTATGAGCAGTATGCTGCATGGGGTGTTGATCTAGTGAAACATGACTGTGTGTTTGGTGATGACTTGGAATTAAATGAAATAAGCTATGTTTCAGAGGTTCTTAGTGAGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCAATGGCCAAGAGTGTCAGTGGACTAGTCAACATGTATCGAATAACTGGCGATGACTGGGATTATTGGGCGGATGTCCAGGCCCATTTTGACGTAACAAGGGATTTCTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATGCAGGTTCAAATGATGGTCCACACAGGTTTAGTAGGCTCAATCTAGAAGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGAGGGGATATGCGGAAGATCGATTCCATCACATACCAACTTATAACAAATCCTACCCTGCTAGAGATTAATTCCTTCAGCTCAAATAATATGGAGTTTCCTTATATCACGAGCTCAAATAACTTGAAGCACGCTGGAGGGAAAAAGCAAAGACCGAACCAAGGAACAAAGAAAACATCATCGTACACACATTCCTTAGGTTTGACTAGCTGTAGCGAATCAAAGGCGAGTGGTTGGTCTATTGAAAGTCATAGCCATAACCAATATCTTGAAACAATCTGCTGGAAAAAGGGTGCAGAAAACCAGCACCAACCTCCATTCTGCGTAAACAAGAGAGAACTTCAACTCAGATTAGATGGTGAGACTATGTATCAACAGGAGTACCGAGGGAAACACCAATTGGTTGCTACTGACAGAATGAAATTTTGCTTAGACGGTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTCCAAGAGAGGAACATTTTCTCCATGCAGATGGGATTCTAATCAGATCTGGGAACTGCACTCCAATGGGACCATGGTAAATAGTTACTCCGGTCTTTGTGCAACAGTAAAGCTTGTTGAAGCTGAGGCTAATGCTGGTGGGATTCGCTCTTGGATTGCAACAGGAAGAAAAGGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGATGAGAAAACCGAGATATATGCAAAGATATCATATCTGGGGAAGGTTCTTCCTGACAAAAGGATCGATTCATGCAAGGGGAAGGAAGTGTGGAGTGGAAAGAACGTAATCACAACACAGGGGACGATATCAATGGACGTGGAAATCCATGGATGTGCACTATTTGTTCTAAACTGCAACTAG 1932 0.4312 MKCFSLCLVSFWALLPLCLLSVSSQNIPESGQKQASLPPRGWNSYDSFCWTISEDEFLQSAEIVSERLKAHGYEFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMLPDPGRWPSSTGGKGFKEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGSAYLESGRVWRAKDIAIPEKACAWMPHGFMSVNTKLAAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLELNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKSVSGLVNMYRITGDDWDYWADVQAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDAGSNDGPHRFSRLNLEEKRTQMTLWSLAKSPLMYGGDMRKIDSITYQLITNPTLLEINSFSSNNMEFPYITSSNNLKHAGGKKQRPNQGTKKTSSYTHSLGLTSCSESKASGWSIESHSHNQYLETICWKKGAENQHQPPFCVNKRELQLRLDGETMYQQEYRGKHQLVATDRMKFCLDGSPKRKVTSKESKRGTFSPCRWDSNQIWELHSNGTMVNSYSGLCATVKLVEAEANAGGIRSWIATGRKGEIYLAFFNLSDEKTEIYAKISYLGKVLPDKRIDSCKGKEVWSGKNVITTQGTISMDVEIHGCALFVLNCN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03489 643 SUPERFAMILY (Trans)glycosidases 32 383 IPR017853 -
Vian1g03489 643 Gene3D - 557 642 IPR013780 -
Vian1g03489 643 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 12 642 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 SUPERFAMILY Ricin B-like lectins 492 559 IPR035992 -
Vian1g03489 643 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 MobiDBLite consensus disorder prediction 399 422 - -
Vian1g03489 643 Pfam Alpha galactosidase C-terminal beta sandwich domain 561 640 IPR041233 -
Vian1g03489 643 SUPERFAMILY Glycosyl hydrolase domain 560 641 - -
Vian1g03489 643 Gene3D Aldolase class I 29 386 IPR013785 -
Vian1g03489 643 Pfam Alpha galactosidase A 208 383 IPR002241 GO:0004553|GO:0005975
Vian1g03489 643 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03489 Vian-Chr1 57427297 57433546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g03489 11 475 Glycoside Hydrolase AT3G26380 66.381 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03489 - - gmx:100783705 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03489 1 57427297 57433546 Vian1g03489 1 57427297 57433546 ECH
Vian1g03489 1 57427297 57433546 Vian2g03126 2 51838478 51843146 PCT