Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03355 ATGGACTCATCGTTTCAAGGCCCAAACAACCAAAACGACCAAAACGACGACGTTTTCCTCGACGCTCTACCGCACTGCCCCTTCAACCATTGCCCCGCTACCGCTGATACTTCGCCGGAATCTTCCGCTGAGGCTTCCATTCTTTCCGACCTCAACCCACTCTCCCCAACTCCGGCGACCACAGTCCGCCGTCGTTCGACCCGACGTCATTCTCCGGCTAGGGAGCCCAAGAAGACCTGTTCCGACGACAGTTCGTCCACCGTTCCCGGAGAAAACCTTCGGAGCGATCGAAACCTCGAAACTCCGAAAGAAAACGAGGATTCCCCCGAGAGATGCGATTCGAATCAAAAGAAACTTCGTTCCTCTCCATCTCCAAGCGTTGCCAGCGAAGAGGGGAATGAGGAATCGACGTTAACCACCGCCGAGAATGACGACAGAACCACCGATTTCGCGGACTCGGCCGTGGTATTCGGTAATTCCCCTATTAACTTGCTCGATTATATAACTGGGTTGGTTATTAGAGCAATTGTGTTTCAAATCAATGCTTTTTTTGTGTTAGTGAAATGCCCAGTGTGGCTTACGGTACACGCTTTCATGTTTTTTATGGACCCTTTTGGAGCAATTAGAAAGGGGAAAGGATTGTTGGTGGATATTTTGGGTAGAGTGTTGTGTGGTGTTTGTGGGTGCATTGGTTCTTCAGCTCAGGACTGGTTAAAAGAGCACAAGTCTTTGTGGAATGTTGCATTTAGGTGTGGATGGGGATTGTTGTGGTCGGTCTATGTTTGTTGCATTTTGTTTGCTCTTTTCGTTTGTTCTCTAGTGGTGAGTGGGTTTTTCGTGAAGAGTTTGGTTGAGAAGCCTTTTCAGATGAGTCAGGGTTTTAACTTCGATTACACCAAGCAGAGTCCTTTTGCTTTGGTGCCTGTGATGTCTTGTGATAATGTTAGGAGCGGGCATGATTCTGGAACGAACGTTGCTGTTGTAAGTCGGATGGGTAGAAGGGTTATACCTGCTAATCAGAAGGTGCAGGTCGCTGTTTCATTAGTGGTGCCAGAGTCAGAATACAACACAAACCTTGGCATCTTTCAGATCAAGGTAGACTTCTTGTCCTTTGATGGCAAAACAATTTGGACTGCGACCCAACCTTGCATGTTAAAATTCATAAGCGAGCCTATCCGGCTAATGATGACATTCCTCAAGATTGTACCACTTGTCACTGGTTTTATATCAGAAACCCAGACACTGAATGTCAAGCTGAGAGGTTTCGTTGAAGGAAATGTACCTACTTCATGCTTAAAAGTAACACTAGAGCACCGAGCAGAATATCCACCTGGTGCTGGCATTCCTCAAATATATGATTCATCAGTTATTATTGAATCAGAACTTCCCTTAATCAAGAGAATCTTATGGCGTTGGAAGATGGGCATATTTGTATGGATCGCAATGATGGCTTTCATGATGGAGTTACTATTTGTTTTGGTGTGTTGCTTGCCTATAATTATTCCAAGAACCAGGCAAGGTAGTGGTTCTGCTCCTGTTACTGGTAATTGA 1551 0.4584 MDSSFQGPNNQNDQNDDVFLDALPHCPFNHCPATADTSPESSAEASILSDLNPLSPTPATTVRRRSTRRHSPAREPKKTCSDDSSSTVPGENLRSDRNLETPKENEDSPERCDSNQKKLRSSPSPSVASEEGNEESTLTTAENDDRTTDFADSAVVFGNSPINLLDYITGLVIRAIVFQINAFFVLVKCPVWLTVHAFMFFMDPFGAIRKGKGLLVDILGRVLCGVCGCIGSSAQDWLKEHKSLWNVAFRCGWGLLWSVYVCCILFALFVCSLVVSGFFVKSLVEKPFQMSQGFNFDYTKQSPFALVPVMSCDNVRSGHDSGTNVAVVSRMGRRVIPANQKVQVAVSLVVPESEYNTNLGIFQIKVDFLSFDGKTIWTATQPCMLKFISEPIRLMMTFLKIVPLVTGFISETQTLNVKLRGFVEGNVPTSCLKVTLEHRAEYPPGAGIPQIYDSSVIIESELPLIKRILWRWKMGIFVWIAMMAFMMELLFVLVCCLPIIIPRTRQGSGSAPVTGN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03355 516 MobiDBLite consensus disorder prediction 1 17 - -
Vian1g03355 516 MobiDBLite consensus disorder prediction 1 145 - -
Vian1g03355 516 Pfam Putative adipose-regulatory protein (Seipin) 267 484 IPR009617 GO:0019915
Vian1g03355 516 PANTHER BERNARDINELLI-SEIP CONGENITAL LIPODYSTROPHY 2 HOMOLOG BSCL2 PROTEIN 154 508 IPR009617 GO:0019915
Vian1g03355 516 MobiDBLite consensus disorder prediction 34 62 - -
Vian1g03355 516 MobiDBLite consensus disorder prediction 96 117 - -
Vian1g03355 516 MobiDBLite consensus disorder prediction 118 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03355 Vian-Chr1 55814307 55816742 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03355 K19365 - gmx:100813988 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03355 1 55814307 55816742 Vian1g03355 1 55814307 55816742 ECH
Vian6g01634 6 33889337 33891704 Vian1g03355 1 55814307 55816742 ECH
Vian1g03355 1 55814307 55816742 Vian6g01634 6 33889337 33891704 PCT