Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03079 ATGGCGGTGGAGTACACATGCTGCACATCGCAGTTCTTCGTTCACATACTCGTGATCGTGCTGCTGGTGCTGTTCGCGGGCCTCATGTCGGGCCTCACGTTGGGCCTCATGTCGCTCAGCCTTGTTGATCTGGAGGTCCTCGCTAAGTCTGGTACTCCTCAAGATCGTAAGCACGCTGCGAAGATATTACCAGTTGTCAAAAACCAACATTTATTGCTTTGTACTCTGCTAATTTGCAATGCTGCAGCCATGGAGGCACTTCCTATTTTTCTCGATAGTCTTGTTACTGCATGGGGTGCTATCCTTATTTCGGTGACATTAATTCTTTTGTTCGGTGAGATTATACCCCAATCAGTATGTTCTCGGTATGGTTTGGCTATTGGTGCAGCAGTGACTCCCTTTGTTCGGGTGCTTGTATGTGTATGCTTTCCTGTTGCCTTTCCAATTAGTAAGTTGTTGGACTTTTTGCTGGGCCATAGACATGAGGCCTTGTTCCGTAGAGCTGAGTTGAAGACACTTGTAAATTTGCATGGTAATGAGGCTGGAAAAGGTGGGGAACTGACACATGATGAAACAACTATCATTGCTGGGGCACTTGAACTCAGCGAGAAGACAGCTAGTGATGCCATGACTCCTATAGCTGAAACATTTGCTGTTGATATTAATTCGAAGCTTGATAGGGAACTGATGAATGAAATATTGGAGAAAGGGCATAGCAGAGTCCCAGTGTTCTATGAGCAGCCTACAAACATTATAGGACTTATACTGGTGAAGAATTTATTGACTGTTCATCCAGAAGATGAAGCATCCGTGAAGAGTGTAACAATACGCAGGATTCCAAGGGTTCCAGAAAGTATGCCACTTTATGACATTTTAAATGAATTCCAGAAGGGCCATAGCCACATGGCAGTTGTTGTGAGACGGTGTGACAAGACGAAGCAGCAATCCTCCCAAAATAATGCAAACGACTCGGTGAGAGATGTGAAGGTGGATATTGACGGTGAAAAGCCTCCCAAAGAGAAACCTTTGAAATCCAAGGTGCCACTCCATAAGTGGAAAAGCTTCCCAAATACAAACATGTCAAATCGGGTTGGCTCTCGGAGCAGAAAATGGTCAAAAAATATGTACTCAGATATTTTGGAGATAGATGGAAGTCCCCTTCCTAAGCTCCCTGAAGAAGAAGAAGCTGTTGGAATTATTACAATGGAAGATGTCATTGAAGAGCTTTTACAGGAGGAGATCTTTGACGAAACAGATCATCATTTTGAAGACTCATGA 1278 0.4405 MAVEYTCCTSQFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAAKILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVCSRYGLAIGAAVTPFVRVLVCVCFPVAFPISKLLDFLLGHRHEALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELSEKTASDAMTPIAETFAVDINSKLDRELMNEILEKGHSRVPVFYEQPTNIIGLILVKNLLTVHPEDEASVKSVTIRRIPRVPESMPLYDILNEFQKGHSHMAVVVRRCDKTKQQSSQNNANDSVRDVKVDIDGEKPPKEKPLKSKVPLHKWKSFPNTNMSNRVGSRSRKWSKNMYSDILEIDGSPLPKLPEEEEAVGIITMEDVIEELLQEEIFDETDHHFEDS 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03079 425 Pfam Cyclin M transmembrane N-terminal domain 17 190 IPR002550 -
Vian1g03079 425 MobiDBLite consensus disorder prediction 326 344 - -
Vian1g03079 425 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vian1g03079 425 MobiDBLite consensus disorder prediction 310 344 - -
Vian1g03079 425 PANTHER METAL TRANSPORTER CNNM 3 422 IPR045095 GO:0010960
Vian1g03079 425 CDD CBS_pair_CorC_HlyC_assoc 205 306 IPR044751 -
Vian1g03079 425 FunFam DUF21 domain-containing protein 189 324 - -
Vian1g03079 425 MobiDBLite consensus disorder prediction 310 325 - -
Vian1g03079 425 Gene3D - 191 325 IPR046342 -
Vian1g03079 425 SUPERFAMILY CBS-domain pair 194 411 IPR046342 -
Vian1g03079 425 Gene3D - 376 417 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03079 Vian-Chr1 51315988 51320827 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03079 K16302 - gmx:100801937 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03079 1 51315988 51320827 Vian1g03079 1 51315988 51320827 ECH
Vian1g03079 1 51315988 51320827 Vian6g01893 6 36207955 36210694 PCT