Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g03029 ATGGAAGAGGTGGAGCAGGTCAAAGCAGAGGCATTGCAGATAATGGGAGTTTTTCAACTGCTTCCGAAGCTCGTCGTCTTCGATCTCGATTACACTCTTTGGCCTTTCTACTGTGAGTGCCGCTCGAAGCACGACACGCCTTATTTGTTTCCTCATTCTAGAGGCATTTTGCATGCGCTCAAACGCCAGAACGTTCATTCTGCAATTGCTTCCAAGTCACCAACTCCTGACATTGCAACCACGTATCTTGACAAGCTCGGCATCAGGTCAATGTTCGTCGCCGAGGAAATATTTTACAGCTGGACACACAAAACAGATCATTTTCAGAAAATTCATTTAAAGACTGGGATCCCCTATAACTCCATGCTATTCTTTGACGATGATAATAACAACATCCAAGAGATCTCAAAAATTGGAGTAACAAGTATTTTGGTTAGAAATGGGGTAAATCTTGAAGCATTTAGAAACGGCCTCGCAAAATTTTCTCAAAACGGGAATGCAGCAAAGAAGAACAAGCAGAAAAGGCCCAAGTAA 534 0.4288 MEEVEQVKAEALQIMGVFQLLPKLVVFDLDYTLWPFYCECRSKHDTPYLFPHSRGILHALKRQNVHSAIASKSPTPDIATTYLDKLGIRSMFVAEEIFYSWTHKTDHFQKIHLKTGIPYNSMLFFDDDNNNIQEISKIGVTSILVRNGVNLEAFRNGLAKFSQNGNAAKKNKQKRPK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g03029 177 NCBIfam HAD-IIIC family phosphatase 23 138 IPR010033 -
Vian1g03029 177 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 1 171 IPR010036 GO:0016791
Vian1g03029 177 Gene3D - 5 167 IPR023214 -
Vian1g03029 177 SUPERFAMILY HAD-like 22 153 IPR036412 -
Vian1g03029 177 SFLD C1.5.2: MDP Like 5 169 - -
Vian1g03029 177 FunFam Magnesium-dependent phosphatase 1 7 167 - -
Vian1g03029 177 CDD HAD_MDP-1_like 22 145 IPR035679 -
Vian1g03029 177 Pfam Acid Phosphatase 49 163 IPR010036 GO:0016791
Vian1g03029 177 Pfam Acid Phosphatase 21 41 IPR010036 GO:0016791
Vian1g03029 177 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 5 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g03029 Vian-Chr1 50074548 50076486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g03029 K17619 - gmx:100795199 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g03029 1 50074548 50076486 Vian1g03029 1 50074548 50076486 ECH
Vian1g03029 1 50074548 50076486 Vian6g01933 6 36542963 36543801 PCT