Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g02073 ATGGCACTCAGCAACAACGTGATAGGGGCCATCAACTTCGTTGCGGCACTTCTCTCAATTCCAATCATTGCTGCAGGGATCTGGCTAACAACAGAGCCAGCAGATTCGTGCGTCAAAATTCTTCAATGGCCTGTCATAATCTTGGGGGTTCTCATACTTGTAGTGGCTCTGGCAGGGTTTCTAGGAGCCTTCTGGAGAATCCCTTCGCTTCTGGTCTTCTACCTGGTTGCAATGTTCGTGCTTATTCTGTTGCTTGTTAGCTTGGTGGTTTTCACCTATGCTGTCACCCTTAGAGGCCATGGCAACATTGAACCCAATCGCTCCTACTTGGAATATCGTATCGATGATTTCTCACTTTGGCTTCGTCGAAGAGTACGAAGCTCAAACAGATGGGACAACGTTAGAAGGTGTCTTATGTCGTCAAATATATGTGCTGAGTTGGATCAACGCTACCGAACGGCGCAGGACTTCTTCAACGCACACCTAACCCCCATTCAGTCAGGGTGCTGCAAGCCTCCAACAAAATGTGGTTACACGTTTGTGAACCCGACGTATTGGATCAGCCCCATCAACACGGCAGAAGACATGGATTGCATGAAATGGAGCAACGACCAAGCACAACTTTGTTACAACTGTGATTCATGCAAAGCTGGTTTGTTGGCAACCCTTAGGGTGGAGTGGAGAAGGGCCAATGTGATCTTGATCGTTACTCTTGTTGCTTTAATTGCAGTCTATTTGGTTGGCTGCTTTGCCTTTAGGAATACCAAAACGGATGAGCTCTTTCGCAAATACAAGCAAGGTTACTCTTAA 810 0.4691 MALSNNVIGAINFVAALLSIPIIAAGIWLTTEPADSCVKILQWPVIILGVLILVVALAGFLGAFWRIPSLLVFYLVAMFVLILLLVSLVVFTYAVTLRGHGNIEPNRSYLEYRIDDFSLWLRRRVRSSNRWDNVRRCLMSSNICAELDQRYRTAQDFFNAHLTPIQSGCCKPPTKCGYTFVNPTYWISPINTAEDMDCMKWSNDQAQLCYNCDSCKAGLLATLRVEWRRANVILIVTLVALIAVYLVGCFAFRNTKTDELFRKYKQGYS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g02073 269 Pfam Tetraspanin family 6 249 IPR018499 GO:0016020
Vian1g02073 269 PRINTS Transmembrane four family signature 6 29 - -
Vian1g02073 269 PRINTS Transmembrane four family signature 38 64 - -
Vian1g02073 269 PRINTS Transmembrane four family signature 65 93 - -
Vian1g02073 269 PANTHER TETRASPANIN-8-RELATED 1 258 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g02073 Vian-Chr1 25044028 25045066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g02073 1 269 Miscellaneous Gene Families AT5G46700 66.171 1.39e-125 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g02073 - - gmx:100789266 489.574
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g02073 1 25044028 25045066 Vian1g02073 1 25044028 25045066 ECH
Vian10g01110 10 13386863 13387854 Vian1g02073 1 25044028 25045066 PCT