Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g01110 ATGGCAGCGAGCAACAATGTGATTGTATGCATAAACCTCGTGGCCGTGATCCTTTCAATCCCAATCATCGGTGCCGGAATCTGGCTATCAAACGGCCAAGCAGATTCCTGCGTCCAGTTTCTGCAATGGCCCGTCATCATCCTCGGAGTTCTCGTCTTGGTGGTGGCTCTCGCAGGTTGCATTGGAGCCTTTTTCAGAATCACGTGGCTCCTCATAGTGTACCTCGTTGTCATGCTCGTGCTGTTGATACTGCTAGTGTGTTTGGTGGGCTTTGTTTACATGGTCACGCTTCGAGGTCATGGCAACATTGAAGCTGGCCGGGATTACTTGCAATATCATATGAACGACTTTTCTGGGTTCCTTCGTCGAAGGGTTAGAAGCTCCTTCAAGTGGGATCGCATCAGAAGCTGCATTAGCCAAACCAACGTGTGTGCTCAGCTCAGCCAGAGTTACAGAATGGCCGACGACTTCTTCGACGCACATCTAACGCCCATGCAGTCAGGGTGCTGCAGGCCACCAACACAATGTGGGTATACTTTTGTGAACCCAACCTATTGGATTAGAGCGTTCAACCTTGCAGCAGATATGGATTGCCTGCAATGGAGCAACGATCAAACACAACTTTGCTACAACTGTGACTCGTGCAAGGGTGGTTTATTGGCTAATCTTAGGAAGGAGTGGAAAAGGGCCAATGTGATATTAATCATCACAGTCATTGTTCTAATTGTGGTGTATTTGGTAGGGTGCTGTGCTTTTAGGAATGCCAAAACTGAGGACCTCTTCCGCAAATACAAACAGGGGTATACTTGA 810 0.4827 MAASNNVIVCINLVAVILSIPIIGAGIWLSNGQADSCVQFLQWPVIILGVLVLVVALAGCIGAFFRITWLLIVYLVVMLVLLILLVCLVGFVYMVTLRGHGNIEAGRDYLQYHMNDFSGFLRRRVRSSFKWDRIRSCISQTNVCAQLSQSYRMADDFFDAHLTPMQSGCCRPPTQCGYTFVNPTYWIRAFNLAADMDCLQWSNDQTQLCYNCDSCKGGLLANLRKEWKRANVILIITVIVLIVVYLVGCCAFRNAKTEDLFRKYKQGYT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g01110 269 PRINTS Transmembrane four family signature 38 64 - -
Vian10g01110 269 PRINTS Transmembrane four family signature 65 93 - -
Vian10g01110 269 PRINTS Transmembrane four family signature 6 29 - -
Vian10g01110 269 Pfam Tetraspanin family 6 251 IPR018499 GO:0016020
Vian10g01110 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016020
Vian10g01110 269 PANTHER TETRASPANIN-8-RELATED 1 258 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g01110 Vian-Chr10 13386863 13387854 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g01110 1 269 Miscellaneous Gene Families AT5G46700 65.428 2.12e-129 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g01110 - - gmx:100795775 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g01110 10 13386863 13387854 Vian10g01110 10 13386863 13387854 ECH
Vian10g01110 10 13386863 13387854 Vian1g02073 1 25044028 25045066 PCT