Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01748 ATGAGTGCCGTTAATTTTAACGCATGGCTACACCCCAGCTTCACCAGATCCAGATCCCCAACTTTTCTATTTCACGGCCTCACCAACTCCCCCATTCCCTCCTTCATCGTTACCAAACGCCCAAGAGATAAGCTTTATTCCTCCTCGCCTTTCACAGTCTCCGCAGTGCTCACCAAAGAGGAGACTGTTGAGACGGAAGAGAAGCCGGCGTTTAACTTCAAGTCCTACATGGTCCAGAAAGCCGACGCCGTCAACCAGGCGCTTGACGACGCCGTTCCGCTCCGCGAGCCGCTGCGGATCCACGAGGCCATGCGCTACTCCCTCCTCGCCGGTGGGAAGCGCGTGCGCCCCGTCCTCTGCGTCGCCGCCTGTGAGCTCGTCGGAGGGGCCGCCTCCACCGCGATGCCCGCTGCCTGCGCCGTCGAGATGATCCACACCATGTCCCTCATCCACGATGACCTCCCCTGCATGGACAACGACGACCTCCGCCGCGGTAAGCCTACCAACCACAAGGTCTTCGGGGAGGACGTCGCTGTCCTCGCCGGCGACGCGCTCCTCGCATTTGCCTTCGAGCACATCGCCGGGGCCACCGTCGGTGCCTCCCCCCCTCGCATCGTCCGCGCCCTCGGAGAGCTCGCACGAGCCATCGGCGCCGAGGGACTCGTCGCCGGGCAGGTGGTCGACATCAAGTCCGAGGGGCTTGACGACGTTGGCCTCGAACGCTTGGAGTTCATCCATCTCCACAAGACGGCGGCCCTGCTGGAAGGCGCGGTGGTCCTTGGCGCCATCCTGGGCGGTGGAACGGACGAGGAGATTGAGAAATTGAGGAAGTTTGCCCGGTATATAGGATTGTTGTTTCAGGTGGTTGATGACATTCTGGATGTTACGAAGTCTTCTCAGGAATTGGGGAAAACTGCGGGGAAGGATCTTGCGGCTGATAAGGTTACTTATCCCAAGCTTTTGGGGATTGAGAAGTCTAAGGAGTTTGCTGCCAAATTGAACAAAGATGCTCAGGATCAGCTTTCTGGCTTTGACCCTGTCAAGGCTGCTCCTTTAGTTGCTTTAGCCAATTACATTGCTTATAGGCAGAACTAG 1095 0.5845 MSAVNFNAWLHPSFTRSRSPTFLFHGLTNSPIPSFIVTKRPRDKLYSSSPFTVSAVLTKEETVETEEKPAFNFKSYMVQKADAVNQALDDAVPLREPLRIHEAMRYSLLAGGKRVRPVLCVAACELVGGAASTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIAGATVGASPPRIVRALGELARAIGAEGLVAGQVVDIKSEGLDDVGLERLEFIHLHKTAALLEGAVVLGAILGGGTDEEIEKLRKFARYIGLLFQVVDDILDVTKSSQELGKTAGKDLAADKVTYPKLLGIEKSKEFAAKLNKDAQDQLSGFDPVKAAPLVALANYIAYRQN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01748 364 SFLD Polyprenyl Transferase Like 76 362 - -
Vian1g01748 364 FunFam Geranylgeranyl diphosphate synthase 70 364 - -
Vian1g01748 364 SUPERFAMILY Terpenoid synthases 73 344 IPR008949 -
Vian1g01748 364 ProSitePatterns Polyprenyl synthases signature 1. 149 165 IPR033749 -
Vian1g01748 364 Gene3D Farnesyl Diphosphate Synthase 65 364 IPR008949 -
Vian1g01748 364 ProSitePatterns Polyprenyl synthases signature 2. 282 294 IPR033749 -
Vian1g01748 364 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 41 364 - -
Vian1g01748 364 CDD Trans_IPPS_HT 96 362 IPR000092 GO:0008299
Vian1g01748 364 Pfam Polyprenyl synthetase 100 334 IPR000092 GO:0008299
Vian1g01748 364 SFLD Isoprenoid Synthase Type I 76 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01748 Vian-Chr1 20400711 20401805 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01748 K13789 - gmx:100785539 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01748 1 20400711 20401805 Vian1g01748 1 20400711 20401805 ECH
Vian1g01748 1 20400711 20401805 Vian10g00659 10 6363059 6364147 ECH
Vian10g00659 10 6363059 6364147 Vian1g01748 1 20400711 20401805 PCT