Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00659 ATGGCTTCTCCTTATGCCTGTCTCAATTCCTCCATGCTCAGCACACCTTCACCTCTCTTTCTCACTCCCCCTTTTCGCACTCTCACACTGCTTCCCAATCCCACCAAACCACCAACGCCAAAACTCTCATCTTTTCCCTCTCTCTCCGTCTCTGCTGTGCCCGCTAAGGTAGACACCGCTGTGAGAATACCGGAAATCGAAGATTTTGATTTCAAAGTCTACATGCTCCACAAGGCCCACACGGTGAACCAAGCCTTGGACGCAGCCATTGCGCTGCGCGACCCGGAGAAGATCCACAAAGCCATGCGCTACTCCCTTCTTGCCGGCGGCAAGAGGATCCGCCCCATCCTCTGTATCGCTGCCTGCGAGCTCGTCGGTGGCGATGATGCCACTGCCATCCCAGCCGCCTGCGCCGTCGAGATGATCCATACCATGTCGCTCATCCACGACGATCTGCCATGCATGGACAACGACGACCTCCGACGCGGCAAGCCGACCAACCACAAGGTCTTCGGCGAGGATGTGGCGGTTCTTGCCGGCGATGCGCTGCTCGCGTTCGCGTTTGAGCACTTGGCGGCGGCGACCGAGGGTGTGTCCCCAGCGCGCGTGGTTCGTGCGATTGGGGAGTTGGCGAAATCGATCGGAGGAGATGGCCTTGTGGCGGGACAGGTGGTGGATTTAGATTCGGAAGGAGCCTCGAATGTGGGGCTGGAGAGGTTGGAATTCATTCATGTGCACAAAACGGCGGCGTTGCTGGAAGCTGCGGTTGTGTTGGGCGCAATAGTGGGAGGTGGGTCGGACGAGGAGATTGAGAAATTAAGGAAGTTCGCTAGGTGCATTGGTTTGTTGTTTCAGGTGGTGGATGACATTCTGGATGTAACTAAGTCGTCCGAGGAATTGGGGAAGACGGCGGGGAAGGACTTGGTGGCTGATAAGGTCACGTACCCTAAACTTTTAGGGATACAGAAGTCCAAAGAGTTTGCTGAGAAACTGTTGCTGGAAGCGAAGGAACAATTGTTTGGATTTGATCCCCGAAAGGCAGCTCCTTTATTTGCATTAACCAATTACATTGCTTACAGGCAAAGTTAA 1089 0.5473 MASPYACLNSSMLSTPSPLFLTPPFRTLTLLPNPTKPPTPKLSSFPSLSVSAVPAKVDTAVRIPEIEDFDFKVYMLHKAHTVNQALDAAIALRDPEKIHKAMRYSLLAGGKRIRPILCIAACELVGGDDATAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHLAAATEGVSPARVVRAIGELAKSIGGDGLVAGQVVDLDSEGASNVGLERLEFIHVHKTAALLEAAVVLGAIVGGGSDEEIEKLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIQKSKEFAEKLLLEAKEQLFGFDPRKAAPLFALTNYIAYRQS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00659 362 FunFam Geranylgeranyl diphosphate synthase 68 362 - -
Vian10g00659 362 SUPERFAMILY Terpenoid synthases 74 340 IPR008949 -
Vian10g00659 362 CDD Trans_IPPS_HT 94 360 IPR000092 GO:0008299
Vian10g00659 362 SFLD Isoprenoid Synthase Type I 76 360 - -
Vian10g00659 362 ProSitePatterns Polyprenyl synthases signature 2. 280 292 IPR033749 -
Vian10g00659 362 Pfam Polyprenyl synthetase 96 332 IPR000092 GO:0008299
Vian10g00659 362 ProSitePatterns Polyprenyl synthases signature 1. 147 163 IPR033749 -
Vian10g00659 362 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 55 361 - -
Vian10g00659 362 Coils Coil 361 362 - -
Vian10g00659 362 SFLD Polyprenyl Transferase Like 76 360 - -
Vian10g00659 362 Gene3D Farnesyl Diphosphate Synthase 65 362 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00659 Vian-Chr10 6363059 6364147 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00659 K13789 - gmx:100778289 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00659 10 6363059 6364147 Vian10g00659 10 6363059 6364147 ECH
Vian1g01748 1 20400711 20401805 Vian10g00659 10 6363059 6364147 ECH
Vian10g00659 10 6363059 6364147 Vian1g01748 1 20400711 20401805 PCT