Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01744 ATGGCACGTAGCTTCACATTCTCCTTCTTCTTCTTCTTCATCTTTAAATCTCAATATACCACCGTCGTCTTCTCCCAGAATACCACCCAACAACGTTTTAAAGAAGCTCCAAAGTTCTATAACTCCCCCACATGCAACACCCTGCAGCACCACCCGAATGACACGTGCCCCAGGAATGCAGTCCACGTGGCAATGACCCTGGACGTGGCATACATCCGAGGATCCATGGCGGCAATCCTCTCCGTGCTCCAACACAGCTCATGCCCAGAAAACGTGATCTTCCACTTCCTCTCCGCAGCTTCCAAACCTTCCTCCTTCACTACCCTAAACCAAACACTAACTAATTCCTTTCCTTATTTGAATTTCCAAATTTATCCCTTCGACGACATCGCGGTTTCGCGCCTCATCTCCACCTCCATACGCTCCGCGCTGGACACGCCCCTCAATTATGCGCGAAGTTACCTTGCAGACCTCCTCCCTCACTGCGTCGTCAGAGTCGTATACCTTGATTCCGACTTAATCCTTGTTGACGACATCGCCAAACTCGCCTCCACGCCGCTCAGCGACACGGAGGTCCTAGCCGCGCCGGAGTATTGTTCCGCCAACTTCTCGACCTACTTCACGCCCTCATTCTGGGCCAACCCCTCGCTATCGCTCTCCTTCTCGAACAGGAAGCGGCCGTGCTACTTCAACACCGGCGTTATGGTGATCGACCTACAGCGGTGGCGGGCCGGGGACTACACAACAGTCATCGAAGAGTGGATGGAGTTGCAGAAGAGGATGCGGATCTACGAGCTCGGGTCGCTTCCGCCATTCCTGCTCGTCTTCGCCGGAAGGATTGCGGCGGTGGATCGCCGTTGGAATCAGCACGGACTCGGCGGGGACAATTTTCGTGGGCTTTGCCGGGAACTGCATCCCGGGCCCGTGAGTCTGCTGCATTGGAGTGGGAAGGGGAAGCCTTGGGTCAGGCTCGATGCAAAGATGCCTTGCCCTTTGGACGTTCTGTGGGCGCCGTACGATCTGCTCCAAACTCCCTAG 1038 0.553 MARSFTFSFFFFFIFKSQYTTVVFSQNTTQQRFKEAPKFYNSPTCNTLQHHPNDTCPRNAVHVAMTLDVAYIRGSMAAILSVLQHSSCPENVIFHFLSAASKPSSFTTLNQTLTNSFPYLNFQIYPFDDIAVSRLISTSIRSALDTPLNYARSYLADLLPHCVVRVVYLDSDLILVDDIAKLASTPLSDTEVLAAPEYCSANFSTYFTPSFWANPSLSLSFSNRKRPCYFNTGVMVIDLQRWRAGDYTTVIEEWMELQKRMRIYELGSLPPFLLVFAGRIAAVDRRWNQHGLGGDNFRGLCRELHPGPVSLLHWSGKGKPWVRLDAKMPCPLDVLWAPYDLLQTP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01744 345 Pfam Glycosyl transferase family 8 62 323 IPR002495 GO:0016757
Vian1g01744 345 SUPERFAMILY Nucleotide-diphospho-sugar transferases 61 341 IPR029044 -
Vian1g01744 345 PANTHER GLYCOSYLTRANSFERASE 8 DOMAIN-CONTAINING PROTEIN 14 343 - -
Vian1g01744 345 FunFam Hexosyltransferase 62 330 - -
Vian1g01744 345 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 62 329 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01744 Vian-Chr1 20307104 20308141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01744 31 344 Glycosyltransferase AT3G50760 72.152 2.66e-170 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01744 K20893 - gmx:100805007 567.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01744 1 20307104 20308141 Vian1g01744 1 20307104 20308141 ECH
Vian1g01744 1 20307104 20308141 Vian10g00654 10 6309454 6310524 ECH
Vian10g00654 10 6309454 6310524 Vian1g01744 1 20307104 20308141 PCT