Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01742 ATGGCAGCTTCTTTCTGCGTTAATGAGAGAAAGGTATGTGTGAGATGGGTGGAGAAATATTTCAAAGATTGCCTCTGCAATATGAAGGATGAAATCTCGTTCGGTTTGGGTCTCACAAGTCTAGTATTCTGGGGAGTAGCTGAAATTCCTCAAATAATAACCATTTTTCGTACTAAGAAAAGCCATGGAGTATCCCTCATCTTTCTCCTCACTTGGGTCGCTGGGGATATATGCAATTTGACTGGTTGCCTTCTCGAACCAGCTACTCTGCCAACACAGTATTACACAGCTCTGCTTTACACAATCACTACGATCGTATTACTTCTGCTAATCATATATTACGACTACATAAGCAATTGGTACAAACGTCCTCAGAAGCTCAACCACAAAAGGGATGAAGAAGATGAGAGAAAACCATTGAAGGCACCGAAGCCAGCCTACGACTCTGGAATTCCAATACCAAACGGCACACGCAAAGCAGTACCTAGACAGGAGCACTATTATATGTCAGCAAGATCATTGGCTGGAAGTGGCACTCCACCCTGGGGAACTTACATGAGAGCTGCTAAAAGTGGTCCTTCAACCATGGAATCCATAGATGCCTCTTCTTCCGAGGATGATGAAGCTTATCCTCCAATCAAGGCAAGGCCAATCCAACGTCCTGCAGTTGGAAGTTATGGTACATTTCTAGCAGCTGCTGTTAGTTTGCCTCTCAAGGCTAATGCTTTGAGGGAAGGGTACATGAGATTTGCTGGAAGAAAACTTTTGCAGGAATACGAGACACATAGTACATTGGGTCAATGCTTGGGATGGCTCATGGCTGGTATCTATATAAGTGGTCGGCTTCCTCAAATATGGTTGAATATTAAAAGAGGCAGTGTGGAGGGCTTAAATCCTTTCATGTTCGTCTTTGCATTGGTAGCTAACGTCACTTACGTGGGAAGTATTCTTGTGAGAACTACAGAAATGCAAAGCATCAAAGCTAACATGCCATGGTTATTGGATGCAGTATTGTGCGTGGCATTGGACCTTTTCATAATAATGCAGTACATCTACTATAGATACTTTCGAAGGAGAGAAGGAAAAGGAGACAACTACGAAGAAGAAAGAGCTGCATCAGCTTGA 1125 0.432 MAASFCVNERKVCVRWVEKYFKDCLCNMKDEISFGLGLTSLVFWGVAEIPQIITIFRTKKSHGVSLIFLLTWVAGDICNLTGCLLEPATLPTQYYTALLYTITTIVLLLLIIYYDYISNWYKRPQKLNHKRDEEDERKPLKAPKPAYDSGIPIPNGTRKAVPRQEHYYMSARSLAGSGTPPWGTYMRAAKSGPSTMESIDASSSEDDEAYPPIKARPIQRPAVGSYGTFLAAAVSLPLKANALREGYMRFAGRKLLQEYETHSTLGQCLGWLMAGIYISGRLPQIWLNIKRGSVEGLNPFMFVFALVANVTYVGSILVRTTEMQSIKANMPWLLDAVLCVALDLFIIMQYIYYRYFRRREGKGDNYEEERAASA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01742 374 Gene3D - 30 116 - -
Vian1g01742 374 Pfam PQ loop repeat 32 88 IPR006603 -
Vian1g01742 374 Pfam PQ loop repeat 266 319 IPR006603 -
Vian1g01742 374 FunFam Vacuolar membrane PQ loop repeat protein 265 363 - -
Vian1g01742 374 FunFam PQ loop repeat family protein 33 124 - -
Vian1g01742 374 PANTHER SEVEN TRANSMEMBRANE PROTEIN 1-RELATED 5 357 - -
Vian1g01742 374 SMART ctns 279 310 IPR006603 -
Vian1g01742 374 SMART ctns 46 77 IPR006603 -
Vian1g01742 374 Gene3D - 265 365 - -
Vian1g01742 374 MobiDBLite consensus disorder prediction 127 148 - -
Vian1g01742 374 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01742 Vian-Chr1 20293837 20297238 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01742 K23678 - gmx:100787660 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01742 1 20293837 20297238 Vian1g01742 1 20293837 20297238 ECH
Vian10g00653 10 6301435 6304706 Vian1g01742 1 20293837 20297238 PCT