Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01489 ATGGCCGTTCAAGCTCAATATCCTTCCAATCTTCTCTTTCTAAACAGGAACAACGGCCAAGAACTCCTTCAGTATTCATTGCAACAACAACAACAACAACAAGGTCCCCTTTTAAACCAACCCCATATGCTATACACCGACGACAACAACAACGACAATGGAACAGGTAACAACGTCAACGACAACAACAATTCTCGCAAGAGAGGCAGAGACGACGCCACTGTTGCAAACAACACCACACCTTCTAATCTTATTAATCCCTTCTCTTTACAATCCCAACCTCCACAGCTTATTCATCTCTCTCAGTTACATAATCATCAACAGAATGTCGTCTCTACTGGTCTCCGCTTATCCTTCGATGACCAACAACATCAACAAAAAAGGCTACACCTTCATCAGAATCATTCTCAACAACTCTTACTGCATGCCTCTCACTCTTCTGCTTTCTCGTCTCTATTGTCCCAAGCCTTGGCTTCTCAAATCAAACAACAACGTGATGAAATTGATCAATTCCTCCTCGCCCAGGGAGAACAACTGCGGCGGACATTGGCGGAGAAAAGGCAGAAGCATTACAACGCGCTGCTGAGAGCGGCGGAGGAGGCGGTGGCACGGTGGCTCAGAGAGAAGGAGGCGGAAGTGGAGAAAGCCACCCGCAAGAACGCAGAGCTGGAAGCACGGGCGGCCCAGCTGAGCGTGGAGGCGCAGGTGTGGCAGGCCAAGGCCCGTGCCCAGGAAGCAACGGCGGCCACCCTCCAGGCCCAACTGCAGCAGACCATAATGTGTCAGGGCGGCGAGGAAGCGGCCGCCGGCGTATCGTGCGCCGTGGAAGGGCAGGCTGAAGACGCGGAGTCTGCCCACATCGACCCAGAGCGCGTGGTGTTAGCCGCGGCGCGTCCTAAATGCAGAGGGTGCACGAAGCGCGTGGCCTCGATCGTGGTTTTGCCGTGTCGGCACTTGTGTATCTGTACAGAATGCGATGCGCATTTCCGAGCGTGCCCAGTTTGTCTCACACCAAAGAATTCAACCGTTGAAGTTTTTCTCTCTTAA 1047 0.5253 MAVQAQYPSNLLFLNRNNGQELLQYSLQQQQQQQGPLLNQPHMLYTDDNNNDNGTGNNVNDNNNSRKRGRDDATVANNTTPSNLINPFSLQSQPPQLIHLSQLHNHQQNVVSTGLRLSFDDQQHQQKRLHLHQNHSQQLLLHASHSSAFSSLLSQALASQIKQQRDEIDQFLLAQGEQLRRTLAEKRQKHYNALLRAAEEAVARWLREKEAEVEKATRKNAELEARAAQLSVEAQVWQAKARAQEATAATLQAQLQQTIMCQGGEEAAAGVSCAVEGQAEDAESAHIDPERVVLAAARPKCRGCTKRVASIVVLPCRHLCICTECDAHFRACPVCLTPKNSTVEVFLS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01489 348 PIRSF SBP1_RNase_bind 1 348 IPR017066 -
Vian1g01489 348 ProSiteProfiles Zinc finger RING-type profile. 301 335 IPR001841 -
Vian1g01489 348 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 51 345 IPR017066 -
Vian1g01489 348 MobiDBLite consensus disorder prediction 40 63 - -
Vian1g01489 348 MobiDBLite consensus disorder prediction 40 83 - -
Vian1g01489 348 Pfam Zinc finger, C3HC4 type (RING finger) 300 340 - -
Vian1g01489 348 Coils Coil 195 240 - -
Vian1g01489 348 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 281 347 - -
Vian1g01489 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 348 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01489 Vian-Chr1 16475314 16476662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01489 301 337 Miscellaneous Gene Families AT2G21380 37.838 6.43e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01489 K19042 - gmx:100788924 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01489 1 16475314 16476662 Vian1g01489 1 16475314 16476662 ECH
Vian10g00433 10 3898282 3899520 Vian1g01489 1 16475314 16476662 PCT