Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00433 ATGGCTGTTCAAGCTCAATATCCCTCCAATGTACTCTTTCTAAACTGCAGCGGAAAAGAACCACCACATGACTATTCTTTGGCAGGGGAACTCCTTGATCATAATCAATCTCCTATGTTATTCAATAACGGAGGTAGTAATTCTCGAAAGAGAGGAAGAGAAACAGCAGCAGCAGCAGCTAAGGCCATTGCGCCAAACCTTGTCAATTCCTTCTCTTTACAATCACAATCACAATCTCCACAGTTCGTAGACCTCACTCAACTTCATAATCAAAATGTAGTCTCCACAGGGCTGGGCTTATCCTTTGGTGACCAACAATTACATCAGCAGCAACAGCAAAATCATGGGTGTCACTCCTCTTCTTTTCTATCTCTATTACCCGATGGTTTGACCTTGCAAATCAAACAACAACACCATGAAATCGACCAATTCCTTCAAGTCCAGGGCGAGCAATTGCGACGGGCATTGACGGAGAAGAGAAAGAGACATTATCGGACACTGCTAAGGGTAACGGAGGAATCGGTGTTGCCGCGGCTGAGGGAGAAGGAGGCAGAGGTGGAGAAAGCGACTAGACGCAACGCGGAACTGGAGGCACGCGCGGCACAGCTTGGCGTGGAGACGCAGCTTTGGCAGGCCAAGGCGAAGGCGCAGGAAGCAACTGCGGCATCGTTGCAGGCGCAGCTGCAGCAGGCCATGATGAGCGGCGAAGACGGCGGCGGAGGAGGGCTGTCATGTGCCGGGGGCGAGGCGGAGGATGCCGAGTCAGCATGTGTTGACCCGGGGCGAGTTGGTCCGAAATGCAGAGGTTGCGCAAAACGGGTGGCTTCTGTGGTGGTTTTGCCGTGTCGACACCTGTGCATCTGCGCTCAGTGCAACACGCATTTTCGGGCGTGTCCAGTTTGCCTCACGGTTAAAAATTCAACCGTTCAAGTCTATCTTTCTTAA 945 0.5153 MAVQAQYPSNVLFLNCSGKEPPHDYSLAGELLDHNQSPMLFNNGGSNSRKRGRETAAAAAKAIAPNLVNSFSLQSQSQSPQFVDLTQLHNQNVVSTGLGLSFGDQQLHQQQQQNHGCHSSSFLSLLPDGLTLQIKQQHHEIDQFLQVQGEQLRRALTEKRKRHYRTLLRVTEESVLPRLREKEAEVEKATRRNAELEARAAQLGVETQLWQAKAKAQEATAASLQAQLQQAMMSGEDGGGGGLSCAGGEAEDAESACVDPGRVGPKCRGCAKRVASVVVLPCRHLCICAQCNTHFRACPVCLTVKNSTVQVYLS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00433 314 Pfam Zinc finger, C3HC4 type (RING finger) 266 303 - -
Vian10g00433 314 Coils Coil 179 206 - -
Vian10g00433 314 PIRSF SBP1_RNase_bind 1 314 IPR017066 -
Vian10g00433 314 Coils Coil 214 234 - -
Vian10g00433 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 260 314 IPR013083 -
Vian10g00433 314 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 43 311 IPR017066 -
Vian10g00433 314 ProSiteProfiles Zinc finger RING-type profile. 267 301 IPR001841 -
Vian10g00433 314 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 251 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00433 Vian-Chr10 3898282 3899520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00433 267 303 Miscellaneous Gene Families AT4G39050 37.838 9.76e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00433 K19042 - gmx:100779548 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00433 10 3898282 3899520 Vian10g00433 10 3898282 3899520 ECH
Vian10g00433 10 3898282 3899520 Vian1g01489 1 16475314 16476662 PCT