Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01407 ATGCTACTCTTGCCACTTACACACACTCTTTCCCATGCTCAATTCAACAACACTCACCACCTCTTGAAATCCACCTCCGCCCGTTCCACCGCCCGCTTCCGCCGCCAACTCTCCCTCCCCCTCTCACCTGGCAGTGACTACACCCTCTCCTTCAACCTGGGCCGCCAGGCCCAGCCCATAACCCTCTACATGGACACAGGCAGTGACTTAGTATGGTTCCCCTGCGCCCCTTTCGAATGCATTCTCTGCGAGGGAAAGCCCAACGAACCCAACGCCTCTCCGCCAGCCAACATCACTCGAAGCGTCGCCGTTTCGTGCAAGTCTCTCGCATGTTCCGCAGCGCACAACTTAGCCCCCTCTTCCGATCTCTGCGCAATGGCTCGTTGCCCTCTGGAATCGATTGAAACCTCCGACTGTGCCAGTTTCAAGTGTCCCCCGTTTTACTACGCTTATGGCGACGGAAGCTTAGTCGCGCGTCTGTATCGTGACTCCCTCTCTCTCTCTTCTCTGTCTCTTAGAAACTTCACCTTCGGTTGCGCACATACAGCTCTCGCTGAACCTACCGGAGTCGCCGGATTCGGCCGCGGTTTGCTCTCTCTCCCGGCGCAGCTAGCCACTCTGTCTCCTCAACTCGGAAACCGCTTTTCGTACTGCCTTGTTTCTCACTCGTTTGACTCTGAGCGAGTTCGAAAATCGAGTCCGCTCATTCTCGGTCGTTACGAGGAGAAGGAAAAGGAGAAGATCAATGGCGGTGAAATGGTTGAGTTTGTGTACACGCCTATGCTTGAAAACCCTAAGCATCCTTATTTTTATATCGTTAGCTTAATCGGAATGTCTGTAGGGAAAAAGAATATTCCCGCGCCGGAGATGCTGCGGCGGGTGAACCATCGAGGAGACGGTGGAGTTGTTGTGGATTCCGGCACAACGTTCACGATGTTGCCGGAGACGTTTTACAACTCGATTGTTGACGAGTTTGACCGCCGAGTCGTGCGAGTCAACCAGCGCGCGCATCAGATTGAGGAAAAAACTGGACTTGCGCCGTGCTATTATTTGAACGCGGTGGCGGAAGTTCCTGTTATGACGTTGCGTTTTGCTGGAGGGAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTTTACGAGTTTTTGGACGGCAGCGATGAGACAAAGGGGAAGAAGAGGGTGGGGTGTTTGATGTTGATGAACGGTGGAGATGAGCGTGAGCTGAGCGGTGGGCCGGGGGCCACACTCGGGAATTACCAGCAGCAAGGATTTGAGGTTGTGTATGACCTGGTAGAGAAGCGCGTGGGATTCGCCAAGAGGCATTGCGCGTCGCTCTGGGATAGACTGAATCGGGACAAGAACTAG 1368 0.5395 MLLLPLTHTLSHAQFNNTHHLLKSTSARSTARFRRQLSLPLSPGSDYTLSFNLGRQAQPITLYMDTGSDLVWFPCAPFECILCEGKPNEPNASPPANITRSVAVSCKSLACSAAHNLAPSSDLCAMARCPLESIETSDCASFKCPPFYYAYGDGSLVARLYRDSLSLSSLSLRNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSERVRKSSPLILGRYEEKEKEKINGGEMVEFVYTPMLENPKHPYFYIVSLIGMSVGKKNIPAPEMLRRVNHRGDGGVVVDSGTTFTMLPETFYNSIVDEFDRRVVRVNQRAHQIEEKTGLAPCYYLNAVAEVPVMTLRFAGGNSSVVLPRKNYFYEFLDGSDETKGKKRVGCLMLMNGGDERELSGGPGATLGNYQQQGFEVVYDLVEKRVGFAKRHCASLWDRLNRDKN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01407 455 PANTHER OS07G0603500 PROTEIN-RELATED 16 443 - -
Vian1g01407 455 ProSiteProfiles Peptidase family A1 domain profile. 47 439 IPR033121 -
Vian1g01407 455 Pfam Xylanase inhibitor C-terminal 271 439 IPR032799 -
Vian1g01407 455 Coils Coil 322 342 - -
Vian1g01407 455 CDD pepsin_A_like_plant 47 443 IPR034161 -
Vian1g01407 455 FunFam Probable aspartyl protease At4g16563 37 237 - -
Vian1g01407 455 Gene3D Acid Proteases 38 238 IPR021109 -
Vian1g01407 455 Pfam Xylanase inhibitor N-terminal 47 238 IPR032861 -
Vian1g01407 455 Gene3D Acid Proteases 248 448 IPR021109 -
Vian1g01407 455 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 302 313 IPR001969 GO:0004190|GO:0006508
Vian1g01407 455 SUPERFAMILY Acid proteases 42 448 IPR021109 -
Vian1g01407 455 FunFam aspartic proteinase nepenthesin-1 245 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01407 Vian-Chr1 15419123 15420490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g01407 18 446 Miscellaneous Gene Families AT1G77480 25.983 8.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01407 - - gmx:100805699 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01407 1 15419123 15420490 Vian1g01407 1 15419123 15420490 ECH
Vian10g00368 10 3296447 3297853 Vian1g01407 1 15419123 15420490 PCT