Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00368 ATGCCTCCTCTGTTTTTCCTCTGTTTCATGCTCTGCATTTCCCACACACACCAAATCATTATATTACCCTTAACAAACTCAATTTCGAAAACCCAATTCAACAGTACCCATCACCTTCTCAAAGCTACCTCCTCTCGCTCAGCCTCGCGCTTCCACCGCCACCGCCAAACCCAGAACTCAATCTCTCTCCCGCTTTCTTCAGGAAGCGACTACACCCTTTCCTTCAATTTAGCTTCAAACCCTTCTCAATCCATAACCCTTTACATGGACACGGGCAGCGACCTCGTCTGGTTCCCATGCACTCCCTTCCAGTGCATTCTCTGCGAAGGCAAATTCAACGCTACAACACCCCTCAACGTCACGCGCTCCCACCGTGTCTCCTGCCAATCCCCTGCATGCTCCGCAGCACACTCCTCTATGTCCTCCAATGACCTCTGCGCAATCGCACGTTGTCCTCTCGACAGTATCGAAACCTCTGATTGCTCTTCTGCCACGTGTCCACCTTTCTACTACGCTTACGGCGACGGAAGCTTCATCGCGCGCCTCTACCGCGATTCTCTATCCATGTCCTCTCTTTTCCTTAAAAACTTCACCTTCGGTTGCGCCCACTCCGCACTCGCCGAACCCACCGGCGTTGCAGGTTTCGGTCGGGGCTTGTTGTCACTCCCTGCGCAACTTGCTACCATCTCTCCAAACCTCGGTAACCGTTTTTCTTACTGTCTGGTTTCTCACTCTTTCGATCAACAACGAGTTCGCAAACCGAGTCCACTCATTCTCGGCCGCTACGACGATTCCGCAGAGGGTAGTGAGTTTGTTTACACGTCCATGCTTCGGAACCCGAAGCATCCTTATTTCTACTGCGTCGGAATCGCCGGAATCTCCGTCGGGAAGAGGACTATTCCGGCGCCGGAGATGCTGCGAAGGGTGAACCGCAGAGGGGACGGCGGCGTGGTTGTTGACAGCGGAACCACGTTCACAATGCTGCCTGCGAGTTTGTATAACTCGGTGGTGAGTGAGTTTGACCGGCGAGTGGGGCGAGTTCTGAAACGCGCGAGTAAGGTGGAGGAGAAAACGGGCCTCGGGCCGTGTTATTTTTTGGAAGGGTTGGTGGAGGTGCCTACGGTGACGTGGCACTTTGTGGGGAATGATTCAAATGTGGTGCTGCCTAGGGGAAACTATTTTTATGAGTTTTTAGACGGTGGTGATGGGGTTAGGAGGAAGGTGGGGTGCTTGATGTTGATGAACGGTGGCGATGACAGTGAGTTGAGCGGTGGACCTGGAGCCACACTTGGGAACTATCAGCAGCAAGGGTTTGAGGTGGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGCAATGCGCTTCGCTTTGGGATAGTCTCAACCGTCACAAAAACTAG 1407 0.5309 MPPLFFLCFMLCISHTHQIIILPLTNSISKTQFNSTHHLLKATSSRSASRFHRHRQTQNSISLPLSSGSDYTLSFNLASNPSQSITLYMDTGSDLVWFPCTPFQCILCEGKFNATTPLNVTRSHRVSCQSPACSAAHSSMSSNDLCAIARCPLDSIETSDCSSATCPPFYYAYGDGSFIARLYRDSLSMSSLFLKNFTFGCAHSALAEPTGVAGFGRGLLSLPAQLATISPNLGNRFSYCLVSHSFDQQRVRKPSPLILGRYDDSAEGSEFVYTSMLRNPKHPYFYCVGIAGISVGKRTIPAPEMLRRVNRRGDGGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVLKRASKVEEKTGLGPCYFLEGLVEVPTVTWHFVGNDSNVVLPRGNYFYEFLDGGDGVRRKVGCLMLMNGGDDSELSGGPGATLGNYQQQGFEVVYDLENQRVGFAKRQCASLWDSLNRHKN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00368 468 Gene3D Acid Proteases 54 260 IPR021109 -
Vian10g00368 468 CDD pepsin_A_like_plant 71 456 IPR034161 -
Vian10g00368 468 PANTHER OS07G0603500 PROTEIN-RELATED 29 456 - -
Vian10g00368 468 FunFam Probable aspartyl protease At4g16563 61 259 - -
Vian10g00368 468 Pfam Xylanase inhibitor C-terminal 286 452 IPR032799 -
Vian10g00368 468 Pfam Xylanase inhibitor N-terminal 79 260 IPR032861 -
Vian10g00368 468 Gene3D Acid Proteases 261 462 IPR021109 -
Vian10g00368 468 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 317 328 IPR001969 GO:0004190|GO:0006508
Vian10g00368 468 ProSiteProfiles Peptidase family A1 domain profile. 71 452 IPR033121 -
Vian10g00368 468 SUPERFAMILY Acid proteases 80 461 IPR021109 -
Vian10g00368 468 FunFam aspartic proteinase nepenthesin-1 261 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00368 Vian-Chr10 3296447 3297853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00368 41 459 Miscellaneous Gene Families AT1G77480 24.719 1.26e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00368 - - gmx:100807884 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00368 10 3296447 3297853 Vian10g00368 10 3296447 3297853 ECH
Vian10g00368 10 3296447 3297853 Vian1g01407 1 15419123 15420490 PCT