Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01406 ATGAGCAGTGGGGAGCTCCTCAACATCGAACCTCTCAAACTCAAGTTCCCCTTTGAACTGAAGAAGCAGATCTCATGTTCTCTTCAATTGTCTAATAAGACCGATGCTTATGTCGCCTTCAAGGTGAAAACAACCAATCCGAAGAAGTATTGGGTTCGTCCGAACACTGGAATTGTCATGCCGCGATCTACTTGTGATGTTATCGTTACCATGCAAGCACAAAAAGAGGCTCCGCCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAGATCGTAAAAACTGTTGATGGTGCTAGTACGAAGGACATCACTCCGGAAATGTTCAACAAGGAGTCGGGGCATGTGGTCGAGGAGAGAAAATTGAGAGTGGTGTATGTTTCTCCTCCTCAAGACAAATTGGCAGAGGAGCTACTGAAGCGGGAAGGCAACAAAAGTCGTGGAGGTATCATATGTCATTATTGGCTTATTAATTGGCTTCCTTGGCATAATAATGGGGTACCTCTTGAAGAAGACCTAAGCAGTTCTGTGCTTCAATTTGATCGTAGTTTCTTTGTTCCTGACTTTCAAGCAATTATGAGAAAAGTGAAAATAGAGTAA 597 0.4288 MSSGELLNIEPLKLKFPFELKKQISCSLQLSNKTDAYVAFKVKTTNPKKYWVRPNTGIVMPRSTCDVIVTMQAQKEAPPDMQCKDKFLLQIVKTVDGASTKDITPEMFNKESGHVVEERKLRVVYVSPPQDKLAEELLKREGNKSRGGIICHYWLINWLPWHNNGVPLEEDLSSSVLQFDRSFFVPDFQAIMRKVKIE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01406 198 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Vian1g01406 198 Gene3D Immunoglobulins 2 130 IPR013783 -
Vian1g01406 198 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 5 132 IPR016763 GO:0005789
Vian1g01406 198 FunFam Vesicle-associated protein 1-1 1 129 - -
Vian1g01406 198 SUPERFAMILY PapD-like 2 132 IPR008962 -
Vian1g01406 198 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01406 Vian-Chr1 15412574 15414576 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01406 - - var:108319675 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01406 1 15412574 15414576 Vian1g01406 1 15412574 15414576 ECH
Vian1g01406 1 15412574 15414576 Vian10g00366 10 3282305 3286784 PCT