Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01399 ATGCACAAGAGCGCTTCAGGTTCCACGTTGGGCCCGGGTGGCCTCGACCTAACTCAGGCCTTCTTCAAGCCCATCACCAATGCTGCCCCTCCCTCTACCACCAAGCAACACACCAAGATCTCCGTCATCGGCGTTGGTAACGTCGGAATGGCCATCGCTCAGACCATCCTCACCCAGGACCTCACCGACGAGCTTGTCCTCGTCGATACCAACGCCGACAAGCTCCGCGGCGAGATGCTCGACCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAAGATCCACGCCTCCACTGACTCTTCCATCACTGCCGGCTCCGATCTCTGCATCGTCACCGCCGGCGCCCGCCAAATCGCCGGTGAGTCCCGCCTCAACCTGCTCCAGCGGAACCTTTCCCTCTTCCGCGCCATCATACCCCCGCTTGTTAGTCACTCCCCCGACACCACTCTCCTCATCGTTTCCAACCCTGTCGACATCCTCACCTACGTCGCCTGGAAGCTTTCCGGTTTCCCGTCCAACCGGGTCATTGGGTCGGGCACCAATTTGGACTCTTCTCGCTTCCGTTTCCTTATCGCCGATCACCTCGACGTCAACGCCCAGGACGTACAGGCGTATATTGTAGGAGAGCATGGAGATAGTTCGGTGGCATTGTGGTCTAGCATTAGCGTTGGGGGTGTTCCAGTGCTGAGTTTTTTGGACAAGCAGCAGATTCCATACGAGAAAGAGACACTGGAGAATATACATAAGTCAGTGGTAGATAGTGCGTATGAAGTGATCAGGTTGAAAGGGTACACGTCCTGGGCAATAGGGTACTCAGTGGCTAATTTGGCCCGCTCCATTCTGAGGGACCAAAGAAAGATCCATCCTGTGTCTGTTCTTGCTAAGGGGTTTTACGGCATCGATGGGGAAGTGTTCCTGAGTTTGCCAGCACAGCTTGGTAGAGGAGGCATACTGGGTGTCACCAATGTCCACTTGAACCTAGAGGAGACGCAGAGACTTGTAGATTCAGCCAAGACCATCCTCGACATGCAGATTCAATTGGTTCTTCCCACAATCATGATGTGGTTTGAATGCAGGCAACGCGTAGAGATTGGAAAGCTCCAATCCAAAGCAACGTACAGTGTGGAATGGATTGGGGCTGGTGGAACACTTCGCTGGCGAGATCCAGCCGAGAAATCTTTCCGGCAGTCGAGGTCAGTGGGTATCGGAGGATCTTTTGGGTAA 1224 0.5515 MHKSASGSTLGPGGLDLTQAFFKPITNAAPPSTTKQHTKISVIGVGNVGMAIAQTILTQDLTDELVLVDTNADKLRGEMLDLQHAAAFLPRTKIHASTDSSITAGSDLCIVTAGARQIAGESRLNLLQRNLSLFRAIIPPLVSHSPDTTLLIVSNPVDILTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEHGDSSVALWSSISVGGVPVLSFLDKQQIPYEKETLENIHKSVVDSAYEVIRLKGYTSWAIGYSVANLARSILRDQRKIHPVSVLAKGFYGIDGEVFLSLPAQLGRGGILGVTNVHLNLEETQRLVDSAKTILDMQIQLVLPTIMMWFECRQRVEIGKLQSKATYSVEWIGAGGTLRWRDPAEKSFRQSRSVGIGGSFG 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01399 407 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 18 347 - -
Vian1g01399 407 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 177 IPR036291 -
Vian1g01399 407 ProSitePatterns L-lactate dehydrogenase active site. 207 213 IPR018177 GO:0004459
Vian1g01399 407 NCBIfam L-lactate dehydrogenase 42 340 IPR011304 GO:0004459|GO:0005737
Vian1g01399 407 Pfam lactate/malate dehydrogenase, NAD binding domain 38 177 IPR001236 GO:0016491
Vian1g01399 407 Gene3D - 180 347 IPR015955 GO:0003824|GO:0016616
Vian1g01399 407 CDD LDH_1 35 346 - -
Vian1g01399 407 PRINTS L-lactate dehydrogenase signature 64 88 IPR001557 GO:0016616|GO:0019752
Vian1g01399 407 PRINTS L-lactate dehydrogenase signature 151 171 IPR001557 GO:0016616|GO:0019752
Vian1g01399 407 PRINTS L-lactate dehydrogenase signature 175 193 IPR001557 GO:0016616|GO:0019752
Vian1g01399 407 PRINTS L-lactate dehydrogenase signature 39 63 IPR001557 GO:0016616|GO:0019752
Vian1g01399 407 PRINTS L-lactate dehydrogenase signature 205 218 IPR001557 GO:0016616|GO:0019752
Vian1g01399 407 FunFam Malate dehydrogenase 33 179 - -
Vian1g01399 407 Hamap L-lactate dehydrogenase [ldh]. 37 348 IPR011304 GO:0004459|GO:0005737
Vian1g01399 407 Gene3D - 20 179 - -
Vian1g01399 407 SUPERFAMILY LDH C-terminal domain-like 178 344 IPR015955 GO:0003824|GO:0016616
Vian1g01399 407 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 180 341 IPR022383 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01399 Vian-Chr1 15350928 15355008 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01399 K00016 - gmx:100814897 616.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01399 1 15350928 15355008 Vian1g01399 1 15350928 15355008 ECH
Vian10g00361 10 3253144 3254278 Vian1g01399 1 15350928 15355008 PCT