Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00361 ATGGCAATGCACAAGAGCAGTTCCGGTTCAGCATTGGGTCCAGGAGGCTTAGACCTAACTCAGGCCTTCTTTAAGTCCGTCATGAACGCTGCACCTTCTTCTCCCACAAAACGCCACACCAAAATCTCCGTTATTGGTGCCGGAAACGTCGGAATGGCCATAGCCCAAACCATCCTCACTCAGGATCTCACCGACGAGCTTGTCCTCGTCGATGCCATTCCTGATAAACTCCGCGGCGAGATGCTCGATCTCCAGCACGCCGCCGCCTTCCTCCCCCGCACCAGAATTCAGGCCTCAACCGACTACTCCGTCACTGCGGGCTCCGACCTCTGCATTGTCACCGCCGGTGCCCGCCAAATCCACGGCGAGTCCAGGCTGAACCTCCTACAAAGGAACGTCACCCTCTTTCAGAAAATCATACCCCCTTTGGTTCGTTACTCTCCCGACACCATTCTCCTTATCGTTTCGAATCCCGTGGACGTGCTCACTTACGTGGCATGGAAACTCTCTGGTTTCCCTTCGAACCGTGTCATCGGGTCCGGCACTAACTTGGACTCCTCACGCTTTCGTTTCCTCATCGCCGATCATCTTGATGTTAACGCTCAAGATGTCCAGGCTTTTATAGTGGGAGAACACGGTGACAGCTCAGTGGCTTTGTGGTCTAGCATTAGTGTTGGGGGTGTTCCAGTGCTGAGCTTTTTGGAGAAACAGGAAATTACGTACGAGAAGGAAATGTTGGAGAGCATACACAAAGAAGTTACAGAGAGTGCTTACGAGGTTATAAGTCTGAAAGGGTACACTTCTTGGGCGATAGGATACTCGGTGGCAAACTTGGCACGAAGCATTCTTAGGGACCAAAGGAGGGTCCACCCTGTGTCGGTTCTTGCAAAGGGTTTCTATGATATCGATGGCGAAGTTTTTCTTAGCTTGCCTGCGCAACTTGGAAGAGGAGGGATATTGGGTGTCACCAATGTTCATTTCACTGAAGAAGAGAAACACAGGCTTATGAATTCAGCTACCACAATCCTCCAAGTTCAGAATCAGTTGACTATTTGA 1056 0.5095 MAMHKSSSGSALGPGGLDLTQAFFKSVMNAAPSSPTKRHTKISVIGAGNVGMAIAQTILTQDLTDELVLVDAIPDKLRGEMLDLQHAAAFLPRTRIQASTDYSVTAGSDLCIVTAGARQIHGESRLNLLQRNVTLFQKIIPPLVRYSPDTILLIVSNPVDVLTYVAWKLSGFPSNRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAFIVGEHGDSSVALWSSISVGGVPVLSFLEKQEITYEKEMLESIHKEVTESAYEVISLKGYTSWAIGYSVANLARSILRDQRRVHPVSVLAKGFYDIDGEVFLSLPAQLGRGGILGVTNVHFTEEEKHRLMNSATTILQVQNQLTI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00361 351 CDD LDH_1 37 348 - -
Vian10g00361 351 Pfam lactate/malate dehydrogenase, NAD binding domain 40 179 IPR001236 GO:0016491
Vian10g00361 351 Gene3D - 182 349 IPR015955 GO:0003824|GO:0016616
Vian10g00361 351 FunFam Malate dehydrogenase 35 181 - -
Vian10g00361 351 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 182 344 IPR022383 GO:0016616
Vian10g00361 351 PRINTS L-lactate dehydrogenase signature 153 173 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 PRINTS L-lactate dehydrogenase signature 41 65 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 PRINTS L-lactate dehydrogenase signature 177 195 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 PRINTS L-lactate dehydrogenase signature 207 220 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 PRINTS L-lactate dehydrogenase signature 66 90 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 179 IPR036291 -
Vian10g00361 351 PIRSF Lac_mal_DH 36 351 IPR001557 GO:0016616|GO:0019752
Vian10g00361 351 ProSitePatterns L-lactate dehydrogenase active site. 209 215 IPR018177 GO:0004459
Vian10g00361 351 Gene3D - 21 181 - -
Vian10g00361 351 PANTHER L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) 20 350 - -
Vian10g00361 351 NCBIfam L-lactate dehydrogenase 44 342 IPR011304 GO:0004459|GO:0005737
Vian10g00361 351 Hamap L-lactate dehydrogenase [ldh]. 39 350 IPR011304 GO:0004459|GO:0005737
Vian10g00361 351 SUPERFAMILY LDH C-terminal domain-like 180 349 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00361 Vian-Chr10 3253144 3254278 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00361 K00016 - gmx:100818856 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00361 10 3253144 3254278 Vian10g00361 10 3253144 3254278 ECH
Vian10g00361 10 3253144 3254278 Vian1g01399 1 15350928 15355008 PCT