Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g01389 ATGCGTGTGAAGGAAATGCACCCCTTGTGCTGTATCTCGCTGGAAAGTCCGGGGATCGGGAACGACTCTCCGGGGCCCGACGCTGCCGCGTTGTCCAGGACGAGGAGTCTCCCGGCCGGTGGATCTAACGGCATTGCGCGGAGGGGATCCGAGGCCACGGTGGCCGGAGTTCTCTACAAGTGGACCAATTACGGCAAGGGATGGAGATCCCGCTGGTTCCTCCTTCGCAATGGCGTCCTCTCTTATGCCAAGATCTGTTGGTCGGAAAACCTCAACCTCCTCTCTCCGGTGGATGAGGTGCGCCTCATCGGAGAAGTCACCGCCAACCGACTTGCCAGAGATGCTGCTACCATACGGCGGAAGAGTCACAAACCTCCTTCCTCCTCTGCCGTAGTGCATCTCAAGATCTCGTCATTCAGAGAGAGCAAGTCGGACGATAGACGGTTCTATATATTCACAGCAACAAAAACTCTCCATCTGAGAACTGATTCAAGGAAGGACCGTGTGGCGTGGATTCAAGCTTTGGTTTCAACCCGAGAATTATATCCACTTCGACCACTCAGCGACCATCTCTCCCTCGCACCGAATCATATATCTGTATCAACCGAAAGGCTTAAGAAACGCTTACTTGAAGAGGGTGGCAGTGAGAGCCTTGTCAAAGAGTGCGAGCAAATCATGTTTGCCGAGTTCTCTGAATTACAAGAGCAACTTCATATACTATGTCAAGAGCGAAGGAATTTGCTTGATACAATAAGGCAGCTGGAGGCTGCTAATATTGAACCTGAGGCCTCTGCATTGCACGACAGTGAATACCAATTAACGAAGAATGGCTTTTCAAGTTTAGGACATGGAAAATATAGCGAATGCAGTACTACTGAATCATCGGATGATATTGAGAAACAGGAGATGGAGGAAGTGTCAGATGAAGATGAAATCTCATATTATGACACTAAAGAGTACTTTACAGAACTTGGTTTTAGGTGTGGGTCCACAGGAGCTTTGGATCCAATGAGCATGTCTGGGGAAGCTAATACACAGTCCATTGATTTGGAGAACAATCACGTTGGGGAGACGGTCAATGGTTTTGGGTACCCTCAGATAGCAAGGCGAAAGAAGCTTCCAGATCCTGTTGAGAAGGAAAAGGGCGTTAGTCTTTGGTCAATTATCAAAGACAACGTGGGCAAAGATCTCACACGAGTTTGTCTTCCTGTATACTTTAATGAGCCAATTTCATCTCTTCAGAAATGTTTTGAGGACTTGGAGTACTCCTTTCTTCTCGATAGAGCTTATGAGTACGGGAAAGCGGGAAACGGTCTCCTTCGGGCCCTGAATGTTGCTGCCTTTGCTGTTTCTGGATATGCATCATCCGAAGGTCGTCATTGTAAACCCTTTAATCCGTTGTTAGGGGAAACTTATGAAGCGGATTATCCTGACAAAGGAGTTCGTTTCTTTTCCGAGAAGGTGAGTCACCATCCAACTGTCGTTGCCTGCCACTGTCAAGGTAGAGGATGGAAGTTTTGGGCCGACAGTAACATTCGGTCAAAATTTTGGGGAAGATCAATTCAGCTTGACCCAGTGGGTGTTCTGACCCTGGAGTTTGATGACGGTGAAATATTTCAGTGGAGCAAGGTCACGACAACAATTTATAATCTTATCCTTGGGAAAATATATTGCGATCATCATGGAAACATGGACATCCGTGGTAATCGCCAATATTCGTGCAGACTTAAGTTCAAAGAACAGGCGATTCTTGATCGAAATCCTCACCAGGTGCATGGCTTTGTTGAAGATGTAACGGGAAAAAAGGTTGCCACATTGTTTGGCAAGTGGGATGACAGCATGTATTATGTTAACGGTGAAGCGAATGTGAAACCGAAAGATTGCACTTTGTCAGACGCAAACTTGTTGTGGAAAAGGACTAAGCCACCTTCTAATCTCACTCGGTACAATCTGACATCATTTGCAATCACACTGAATGAGCTTACTCCCGGGCTAAAGGAGAAGCTTCCACCCACGGATTCCAGGCTGAGACCAGATCAGCGGCATCTAGAGGATGGGGAATACGAGAAGGCTAATATCGAAAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGATGGCAGCCTAGGTGGTTCCGCAGAGAAGGTGACAACGGAACGTTTCGATATATTGGCGGGTATTGGGAAGCGAGAGCTCTAGGAAGATGGAATGGATGCCCAAATATCTTCGGTGAAGTTTATGAAGTAAATTTTGATCCTTTAGATAGCGATAATAATGAATGCAAAATTGTGTGTGGAGGGTTTCCTCGAACCTTCTTGCATGGCAGCAAATTATTTTTGCTGAATCGAAGGGAGGAGGGTAGCCTTTGGGAACCTTCGGAAACGAGGCTCTTTGCAGTTCTGGTAGGAGGACAGGCGATTCCATCTGAGAGTTACTTTCCGAACTTAAATGATTTTAATCGCCTGCAGCTGCTGAAATTTGTAATTAGCCTAATGGACCTAGCATTACACGTACACAGCTTTTCAGCATAA 2550 0.4639 MRVKEMHPLCCISLESPGIGNDSPGPDAAALSRTRSLPAGGSNGIARRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKICWSENLNLLSPVDEVRLIGEVTANRLARDAATIRRKSHKPPSSSAVVHLKISSFRESKSDDRRFYIFTATKTLHLRTDSRKDRVAWIQALVSTRELYPLRPLSDHLSLAPNHISVSTERLKKRLLEEGGSESLVKECEQIMFAEFSELQEQLHILCQERRNLLDTIRQLEAANIEPEASALHDSEYQLTKNGFSSLGHGKYSECSTTESSDDIEKQEMEEVSDEDEISYYDTKEYFTELGFRCGSTGALDPMSMSGEANTQSIDLENNHVGETVNGFGYPQIARRKKLPDPVEKEKGVSLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCFEDLEYSFLLDRAYEYGKAGNGLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADYPDKGVRFFSEKVSHHPTVVACHCQGRGWKFWADSNIRSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKIYCDHHGNMDIRGNRQYSCRLKFKEQAILDRNPHQVHGFVEDVTGKKVATLFGKWDDSMYYVNGEANVKPKDCTLSDANLLWKRTKPPSNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLEDGEYEKANIEKQRLEKRQRMSRKMQENGWQPRWFRREGDNGTFRYIGGYWEARALGRWNGCPNIFGEVYEVNFDPLDSDNNECKIVCGGFPRTFLHGSKLFLLNRREEGSLWEPSETRLFAVLVGGQAIPSESYFPNLNDFNRLQLLKFVISLMDLALHVHSFSA 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g01389 849 Pfam Oxysterol-binding protein 384 737 IPR000648 GO:0008289
Vian1g01389 849 Gene3D - 470 642 - -
Vian1g01389 849 SUPERFAMILY PH domain-like 51 177 - -
Vian1g01389 849 FunFam oxysterol-binding protein-related protein 1D isoform X1 470 641 - -
Vian1g01389 849 Pfam Pleckstrin homology domain 56 175 - -
Vian1g01389 849 Gene3D - 48 181 IPR011993 -
Vian1g01389 849 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 53 737 IPR000648 GO:0008289
Vian1g01389 849 ProSiteProfiles PH domain profile. 51 180 IPR001849 -
Vian1g01389 849 SUPERFAMILY Oxysterol-binding protein-like 379 758 IPR037239 -
Vian1g01389 849 Gene3D - 680 736 - -
Vian1g01389 849 FunFam Oxysterol-binding protein-related protein 2A 680 751 - -
Vian1g01389 849 SMART PH_update 52 182 IPR001849 -
Vian1g01389 849 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g01389 Vian-Chr1 15232988 15242521 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g01389 K20456 - gmx:100793692 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01389 1 15232988 15242521 Vian1g01389 1 15232988 15242521 ECH
Vian10g00358 10 3221690 3230035 Vian1g01389 1 15232988 15242521 PCT