Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00597 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCACAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTGGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAGGGCTTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTTCAATGCAGGGCTCTTGAGCTTTGCTTCAATGTGGCTCTCAACAGGCTCCCAACAGCACCTGCTCCCTTGATCCACACTCAGCCCTCTCTCTCCAATGCTCTCATTGCTGCTTTGAAGAGAGCTCAGGCTCACCAGAGAAGGGGCTGCATAGAGCAACAGCAACAACAGCCTCTTCTTACCATCAAGGTTGAGCTTGAACACCTCATAACATCAATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGATTCTTCACCCCATTCTGTTTTCCAGTGTTACAATAGCTCTGGTGGTGTCTTTTCTTCTCCTTGCTCTCCCTCTTCCAGTGAGAACCACAGGGAAACTACCACCAACCTTGCCAACTTCAGGCAGACTCATCATTTCTTAACTTCTTATGCTTCTGAGTTCCACCCTTCACTTCTCTTTTCTCCGCTGAAGAGTGCACCAGCGTGTTCCTTCTCTGGTGCAGCTTCTTCCAGTAAGGATGATATCAAGGTTGTTCTGGATATTCTCCTGAGGAAGAAGAAAAAGAACACTGTGATTGTAGGTGACTCTGTGTCCTTAGCCGAGGGCCTTGTGGGAGAGTTAATGAGAAGGGTGGAAAGGACAGAAGTGCCTGATGAGTTAAAGTCAACCCATTTTATCAAATTCCAGATTTCACCTGTTTCTTTGAGTTGCATGAAGAGAGATGAAGTTGAAATGAAACTCTTGGAACTAAAAAGGAAGGTGAATTCCGTTGCATCAGGAGAAGGGGGTGGCATTTTTTACATTGGAGACCTGAAGTGGACCGTGGAGGAGGCAAGTCTCAGTGACAAAGAGGAAGGATCCCCAGAAGGAGAAGTTTCTGGTTACAATCCAGTTGATCATTTGGTTTCAGAAATTGGAAAGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTTCTAGTTACCAAACATACATGAGATGTCAAATGAGGCAACCCCCTCTTGAGAAGCAGTGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGACTTGAGTCTTCATGCTCCCAGTGTCCTTGATTCAAAGATGACCATCTCCCAAAATCAATCTCATGTGCCTGAAACAAAGCCCTTTGGTAACACGGAGCAGCAGGATAGGCTGAACTGTTGTGAAGAATGTGCCTCAAATTATGAAAAAGAAGCCCAATTTCTTATGTCAGATCAAAAGAAAATGATGCCGTTCTGGCTTCAGTCTCATAGCACAGAAGACCATAATAAGGATGAATTAGTCAAGTTGAAAAGAAAATGGAATAGACTGTGCCACTGTCTCCATCAAAGCAAACAGCTTCATAACCCATTGAACTGGAACAACAGTTATAATTCAGCAAGCTCCATATCTTTTGCGAACAATGCGACACATTGCTCCACCTCCAAACTTGTTCCTCGGTTCCGGCGCCAACAATCATGCATCATTGAGTTCAATTTCGGCGACAAAAGGAAAGCAACAGAGCGAGTCTTAGATTCCCCGGAGGGCATGGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGCAATGGCGGTTCAGGTGAGACGGTGGGGGATATAACTGATGATAGAACACTGCAAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATCCATTCCAAATCAGCAAAGCAAAATAACAGTATTACTTGGTTACTTGTGAAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAGTTGCAGAATCAGTTTTTGGCTCAACTGATGTGCTCCTTCAATTTGACATGCTAAAGAAAGAGACTTCAGTAGCCCCATTTTCTGAGATGCTGGCAGGAGCGCTGAAAACCCACCAACAGCTTGTGGTGCTAATAGAAAATGTTGACTTTGCCGATGCCCCGTTCAAGAAATTCCTCTCAGATGGGTTTGAAACAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTGATACTCATTTTGACAAGTGGTGGATTCACTAACATTGAGGAGAAGAACGAGGATTCGGTTATCAAGTTGTTATGGGAGGTTAGTGAAAGCAAGCCAAACTTAGAGACTGAATCCGTCACAACTAGGATAATAGAGCCTTGTTTGGGCAACAAAAGAAGAGCTGAACTTGATTTGTTTTCTCACACAAAGAGTTTTGAAGGGAGCAAGAAGAAAGTGGGTTCGAGACAGACGAGCTTTAACACTCTTGATCTGAACATGAAAGCCGATGAAGAGGGTGATGGGGAGGGTAAAGCAGCAGAAAGTAGTACTATTTCAAGTGATTTGACTGGGGAAAGTATAGCAGATCCAGTGAGAAAAAAGGGATTTCTTGAGTCGATTGAAAACCGGTTTGAGTTGAACAAAAATCCTGTTAAAGAGAGAGAGATGGCAGAGTTGTTTTTGTGGAAGATAAAAGGGTCTTTTGAGGAGGTTCGTGGTTGGGAGAAATTAAGTGTAGATGAGAGGGTGATTGAGGATGTGTGTTTTGGGTGTGGTTATTTTAGCGAGAAGGTGTTTGAGAAATGGCTGAAAAAGGTATTCCAAAGCAGCTTAAAAACAGTTAAGTTTGGAGGGAAGGAGGGTATAGTTTTTAGACTTTGTTGGGGTGGTAAAGGAGATACAAAAGCAGATAGTGGCTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAACTTAATTACTTCATAGAGTGA 3003 0.4449 MRSGVCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTAPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEHLITSILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSSSENHRETTTNLANFRQTHHFLTSYASEFHPSLLFSPLKSAPACSFSGAASSSKDDIKVVLDILLRKKKKNTVIVGDSVSLAEGLVGELMRRVERTEVPDELKSTHFIKFQISPVSLSCMKRDEVEMKLLELKRKVNSVASGEGGGIFYIGDLKWTVEEASLSDKEEGSPEGEVSGYNPVDHLVSEIGKLFCDCGTSNNAKVWLMATSSYQTYMRCQMRQPPLEKQWALQAVPVPSGGLDLSLHAPSVLDSKMTISQNQSHVPETKPFGNTEQQDRLNCCEECASNYEKEAQFLMSDQKKMMPFWLQSHSTEDHNKDELVKLKRKWNRLCHCLHQSKQLHNPLNWNNSYNSASSISFANNATHCSTSKLVPRFRRQQSCIIEFNFGDKRKATERVLDSPEGMEGKEVKTTLALGNGGSGETVGDITDDRTLQRAHICKLLQENVPWQSETVPSIAEALIHSKSAKQNNSITWLLVKGNDTIGKRRLALAVAESVFGSTDVLLQFDMLKKETSVAPFSEMLAGALKTHQQLVVLIENVDFADAPFKKFLSDGFETGKFGNSTEENSSQVILILTSGGFTNIEEKNEDSVIKLLWEVSESKPNLETESVTTRIIEPCLGNKRRAELDLFSHTKSFEGSKKKVGSRQTSFNTLDLNMKADEEGDGEGKAAESSTISSDLTGESIADPVRKKGFLESIENRFELNKNPVKEREMAELFLWKIKGSFEEVRGWEKLSVDERVIEDVCFGCGYFSEKVFEKWLKKVFQSSLKTVKFGGKEGIVFRLCWGGKGDTKADSGFMSSSLPKSIQLNYFIE 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00597 1000 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Vian1g00597 1000 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Vian1g00597 1000 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Vian1g00597 1000 Gene3D - 9 168 IPR036628 -
Vian1g00597 1000 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
Vian1g00597 1000 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 967 - -
Vian1g00597 1000 Gene3D - 603 806 IPR027417 -
Vian1g00597 1000 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00597 Vian-Chr1 5782279 5786066 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00597 - - vra:106769441 1796.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00597 1 5782279 5786066 Vian1g00597 1 5782279 5786066 ECH
Vian1g00597 1 5782279 5786066 Vian4g00276 4 2959297 2963378 PCT