Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00542 ATGGCGATTGCTGATCAGCCTGAGACCATAGCCACTGCTATCGAGCATTCTACCGTGCGCCGGAGGCCCACCGCCACCTCCGCTGGTGGTCTCTACAATTCGCCGGAGTCCACCGACAGCTCCGGCGAAGACTTGGTCAAGGATTCCGGTTCCGATGACTTCATGGACACCGTGGACAGCGGGGTCGGCTATTCACAACCACCACAAAAGCATGACGATAAAACCTCCGTCCTCGACTTCGCTTACCGGCCTTCGGTCCCCGCTCACCGTAAAGTCAGGGAAAGTCCTCTCAGTTCCGACAGCATTTTCCATCAGAGTCATGCGGGCCTCTTCAACCTCTGTATCGTAGTACTTGTTGCAGTAAATAGCAGACTCATCATCGAGAATCTAATGAAGTATGGCTTTTTGATCAAGTCTGGCTTTTGGTTTAGTTCATATTCATTGAGTGACTGGCCCCTTTTCATGTGTTGCCTTTCTCTTGTGATATTTCCTTTTACTGCGTTTTTAGTGGAGAAGTTGGCACAACGGAAGTGTATACCTGAATCAGTCGTTGTTCTACTTCATATAATCATTACCTCAGCTTCAGTTTTGTATCCAATTTTAGTAATTCTCAGGTGTGATTCTGCTTTTCTATCGGGTGTCACTTTAATGCTACTTTCTTGCGTTGTCTGGTTAAAATTGGTGTCTTATGCACATACGAACTATGATATGAGACAACTTACCAAATCAATTGAAAAGGGAGAAGCAGTACCCAATACTGTGAATATGGACTATCCTTACAGTGTGAGCTTCAAGAGCTTGGCATACTTCATGGTTGCTCCTACATTATGTTACCAGCAAAGCTATCCTCGCACACCTTATATTCGAAAGGGTTGGGTGTTTCGTCAACTTGTCAAGCTGATAATATTTACAGGAGTTATGGGTTTTATTATTGAACAATACATTAATCCTATTGTACAGAATTCACAGCATCCTTTTAAGGGAGACCTTCTTTATGCCATCGAAAGAGTTCTGAAGCTTTCTGTTCCAAATTTATATGTGTGGCTCTGCATGTTCTATTGCTTTTTTCACCTTTGGTTAAATATACTGGCAGAGCTTCTTCGATTTGGTGATCGTGAATTCTACAAGGACTGGTGGAATGCCAAAACTGTTGAAGATTATTGGAGAATGTGGAATATGCCTGTTCACAAATGGATGATCCGCCACCTATATTTCCCGTGTTTAAGGCATGGTATACCAAAGGCCGTTGCTCTTTTAATTGCCTTCCTGGTTTCTGCTTTATTCCATGAGCTGTGCATTGCTGTTCCTTGCCACATATTCAAATTGTGGGCTTTCGGTGGAATTATGTTTCAGGTTCCTTTGGTCTTGATCACTCATCATCTGCAAAATAAATTCAGAAACTCAATGGTTGGAAATATGATTTTTTGGTTCATATTCAGTATCCTTGGACAACCTATGTGTGTACTGCTCTACTACCACGACTTGATGAATAGGAAAATCAAACTTGACCAGAGCTAG 1518 0.4282 MAIADQPETIATAIEHSTVRRRPTATSAGGLYNSPESTDSSGEDLVKDSGSDDFMDTVDSGVGYSQPPQKHDDKTSVLDFAYRPSVPAHRKVRESPLSSDSIFHQSHAGLFNLCIVVLVAVNSRLIIENLMKYGFLIKSGFWFSSYSLSDWPLFMCCLSLVIFPFTAFLVEKLAQRKCIPESVVVLLHIIITSASVLYPILVILRCDSAFLSGVTLMLLSCVVWLKLVSYAHTNYDMRQLTKSIEKGEAVPNTVNMDYPYSVSFKSLAYFMVAPTLCYQQSYPRTPYIRKGWVFRQLVKLIIFTGVMGFIIEQYINPIVQNSQHPFKGDLLYAIERVLKLSVPNLYVWLCMFYCFFHLWLNILAELLRFGDREFYKDWWNAKTVEDYWRMWNMPVHKWMIRHLYFPCLRHGIPKAVALLIAFLVSALFHELCIAVPCHIFKLWAFGGIMFQVPLVLITHHLQNKFRNSMVGNMIFWFIFSILGQPMCVLLYYHDLMNRKIKLDQS 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00542 505 PIRSF Oat_dag 11 504 IPR027251 GO:0004144|GO:0019432
Vian1g00542 505 PIRSF Oat_ACAT_DAG_ARE 17 503 IPR014371 GO:0008374
Vian1g00542 505 MobiDBLite consensus disorder prediction 19 40 - -
Vian1g00542 505 PANTHER STEROL O-ACYLTRANSFERASE 64 498 IPR014371 GO:0008374
Vian1g00542 505 Pfam MBOAT, membrane-bound O-acyltransferase family 231 489 IPR004299 -
Vian1g00542 505 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00542 Vian-Chr1 5135267 5144879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g00542 80 499 Lipid Metabolism Gene Families AT2G19450 77.857 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00542 K11155 - gmx:548005 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00542 1 5135267 5144879 Vian1g00542 1 5135267 5144879 ECH
Vian1g00542 1 5135267 5144879 Vian4g00316 4 3502414 3518611 PCT