Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00524 ATGTCTACAGCTGAAGGTGGTAAAAGTAGTGCTGAAGAGAACAATTTGCCATTAAAAGATGTTGAAACCGTAGACAAAGCTCTGCGCATAGAGAAAAGCTCTTCCAAGAATTCAAAATATTCGAAATCCCAGTTATTTGATCCCAAATCAAAGGTTAAAGATAGCGAAGAAGATAACTTACGTAAGGATAAGAAGTTTGTATGGAACTGGAAATCACTGAAGGCCCTTTCCCTGTCTCGCAGTAAGAAGTTCAATTGTAGTTTTTCTGTCAAAGTCCATGTGATTGAAGGGTTGCCTTCGAGTTTCAATGATTCTTGCCTTTGTGTGTATTGGAAGAGGAAGGATACGCTTTTGGTGACCCCTCCGGCCAAGGTGATTCAAGGTGTGGCTGAGTTTCAAGACATTTTGACACGCACTTGCTCAATCAATGGAAGTAGGAGTGGACCCCAAAACTCTGCCAAATATGAAGCCAAGCCTTTTATGCTCTATGCTTCTAAGGCGGGTTTCCCAGAAGTTGATTTGGGGAAGCACAGAGTGGACCTCACAAGGTTGCTTCCTCTCACTCTGGAAGAGCTTGAAGAGGAGAAAAGGTCAGGGATATGGACTACAAGTTTTAGATTATCAGGAACAGCAAGGGGTGCAGTAATTAATGTCAGTTTTGGGTATGTCATTGTTGGTGACAATACTAGTGCTACCAGAGACAACCTTTGTGATATTCCTAATGTACTAACTACCAAGAAAAATGGTATGCCTTTGTTGGAACCAGATAAAAAACCTAGTCAGGTTGATGGGAGTAAAGATTTGCCAAGCTTTTCCAGTGATGATTATTCATCTCAAAATGTAGATGAGGTGAAAGATCTTCATGAGGTGTTTCCATCATCAAATTCAGCTCGAATCAGCCCAGTATACATCTCATGTAAAGAATTTGTTGAAGAAATGGGTGGTAGTCCTCTGCATGGCAAACCTGAACTCGAGGGAATTAAAGAAAACATCGACCCGATCAAACCAGTTGTTTGTTCTTCATTTGATAATGAAAAGGACAAGGCAGAAGAGAATCAAGGTGATGAGGGAAAAACATGCAGTCCAATGCATGACAAACCTGAAGTTTTTGTGTTTCAACAAAACCTGGACACAGTTACGCCAAATGACTATCCTTTACCTGATTCTGCAATAGAAAATTTCAAAGAATGTGAAGGTAATGAATTTTCTGTTCTTGACAAGGGCATCGAATTTTCATCAGATGAACATGTTAAACTAGAGGAATCTATTGGAAAAGCTTTTATCGATGTCTACACAGTTGATAGTACTCGGACCCTTGATAATACTGATATTCAAGTATCTTTTCAAGACCATGATAACCAAGATTCCCTTGAAGAACTAAACGATAATTTTAAGGAAAGTGCTGTGGTACGTGAATTTTCTAACCGAAAGGATGACTTGCCAACGAAAGAACATCTACTGCAAGAACTAGAATCAGCTTTAACTAGTGTCTCAGAGTTGGAGACAGCGGCAATGGATTCTCCTGTGGCCATGGAAGCCAAATCTGAGGATAAGTTGAGAAAGTCAAAAAGCTGGGATGATGTTACAGAATCAGTTGCCAGTGAGTTTTTAAGTATGCTTGGCATAGACAATAGTCCAAGGGGTTTTAGTTTTGAAGGTGAGACAGAGTCTCCAAGAGAGCTCCTTTTAAGACAATTTGAGAATGAAGTTCGTTCAGAGGGCTTCTCTTTGTTTGATTTTGACATAGGCAGTGATGATGAAGCAGATAGTGGTAATGATTCTTCTTATGGAACTGAGCATTGGAAGTTCTCCAAGGATACCAAGTCAGCATCCTTAATGCAAGATGTACACAAAGGGCATCTAATCGAGTTTGAGGATGTGAGGAGCAAACAGAAGGTCCGTATGCTAGAACACTTGGAAACAGAAGCCTTAATGCGTAAATGGGGTTTGAATGAGATGGCTTTTCAGAATTCTCCTAAAAAAGATCATAATGGCTTAGGAAGTCCAATATATTTTCTTCCTGAAGAGACTCTACCATTACCTCCTCTAGCAGAGGGGTTAGGTCCTTTTCTTCAGACCGAAGATGGGGGCTTTCTACGGTCAATGAATCCCACACTCTTCAGGAAAAGTAGAACTGGAGGAACATTAATCATGCAGGTTTCCAACCCAATTGTGGTGCCCGCTGAAATGGGTACTGGGATAATGGAGATTTTGCAGTGTTTTGCTTCTGTGGGAATTGAAAAACTTTCCAAGCAGGCAAACAAGTTAATGCCTCTACAAGACATCACGGGAAAGACAATGCAACAAATATCAAGGGAAGCAAAGCCAGTCTTGGGGAGAACATACAGGCAATTAAATTTGCAGCATAATTTGGTAACAGGACAGTATTCTACTTGTGCGAAAAAAGGCTTGAAGGGAATTCTATCTGGTGGACAAATGTCTAATAAGTTCAGTTCAGATTCAGCTGGAGACCACAAAAGCTCAGATCTTGCTCTATTAGCTATGGATAAAATTGAAGCACTTTCATTGGAGGGTTTGAGAATACAATCTGGGATGTCAAATGGGGATGCACCATCAAACATCATTGCAGAATCCTATGGCGATAATTCAGCTCTGCAAGGCAAGGGGGCTGGTACTAGGGGCTCCCTTGGGCTAGATGGAACTGCTGCCATGCAATTGTTAGATATGAAAAACAGCAACAGTGATGAATATGATGGTGTTGACGGCATAATGGCCCTATCATTGACTCTAGATGAATGGATGAGGTTGGATTCTGGTGAGATTGATGAAGATATAGATAACATCATAGCTCTCATGGAGCAGCTTCGTGATCCTCTGAGAAATTATGAGCCTGTTGGGACACCAATGCTTGGTCTTATACAAGTGGAGAGAGTGTTCATCCAACCAAAGCAAGAGATTTATAGGCCGTTGTGTGAGGCAGGGAAGGAAAGTGATGAGTGTGAAATAGTGGGGAAGGTGGAGATGAAGGGGAAGAGAGAAGAGAAAAGTAGTGAAGAAGAGGGCATTCCTCAATTCAAAATTACAGAAGTGCATGTTGCAGGTGTGCAGAAAAGGAAGTTTTGGAGCAGTTTGGGACGACGGCGACAACAAGAACAATCTGCTTCCTGGTGGTTGATTGCTAATGGAATGGGGAAGAACTTAAAGAATCCAGTGCTGAAGTCAAATGCTCCAATCACTACCACAAACGTGCAACCGGGTGACTCATTGTGGAGCATATCATCTCGTATTTATGGTACACTCACAAGATGGAATTGGTAA 3279 0.4135 MSTAEGGKSSAEENNLPLKDVETVDKALRIEKSSSKNSKYSKSQLFDPKSKVKDSEEDNLRKDKKFVWNWKSLKALSLSRSKKFNCSFSVKVHVIEGLPSSFNDSCLCVYWKRKDTLLVTPPAKVIQGVAEFQDILTRTCSINGSRSGPQNSAKYEAKPFMLYASKAGFPEVDLGKHRVDLTRLLPLTLEELEEEKRSGIWTTSFRLSGTARGAVINVSFGYVIVGDNTSATRDNLCDIPNVLTTKKNGMPLLEPDKKPSQVDGSKDLPSFSSDDYSSQNVDEVKDLHEVFPSSNSARISPVYISCKEFVEEMGGSPLHGKPELEGIKENIDPIKPVVCSSFDNEKDKAEENQGDEGKTCSPMHDKPEVFVFQQNLDTVTPNDYPLPDSAIENFKECEGNEFSVLDKGIEFSSDEHVKLEESIGKAFIDVYTVDSTRTLDNTDIQVSFQDHDNQDSLEELNDNFKESAVVREFSNRKDDLPTKEHLLQELESALTSVSELETAAMDSPVAMEAKSEDKLRKSKSWDDVTESVASEFLSMLGIDNSPRGFSFEGETESPRELLLRQFENEVRSEGFSLFDFDIGSDDEADSGNDSSYGTEHWKFSKDTKSASLMQDVHKGHLIEFEDVRSKQKVRMLEHLETEALMRKWGLNEMAFQNSPKKDHNGLGSPIYFLPEETLPLPPLAEGLGPFLQTEDGGFLRSMNPTLFRKSRTGGTLIMQVSNPIVVPAEMGTGIMEILQCFASVGIEKLSKQANKLMPLQDITGKTMQQISREAKPVLGRTYRQLNLQHNLVTGQYSTCAKKGLKGILSGGQMSNKFSSDSAGDHKSSDLALLAMDKIEALSLEGLRIQSGMSNGDAPSNIIAESYGDNSALQGKGAGTRGSLGLDGTAAMQLLDMKNSNSDEYDGVDGIMALSLTLDEWMRLDSGEIDEDIDNIIALMEQLRDPLRNYEPVGTPMLGLIQVERVFIQPKQEIYRPLCEAGKESDECEIVGKVEMKGKREEKSSEEEGIPQFKITEVHVAGVQKRKFWSSLGRRRQQEQSASWWLIANGMGKNLKNPVLKSNAPITTTNVQPGDSLWSISSRIYGTLTRWNW 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00524 1092 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 1091 IPR039614 -
Vian1g00524 1092 Coils Coil 483 503 - -
Vian1g00524 1092 MobiDBLite consensus disorder prediction 1 20 - -
Vian1g00524 1092 MobiDBLite consensus disorder prediction 248 278 - -
Vian1g00524 1092 ProSiteProfiles C2 NT-type domain profile. 76 224 IPR019448 -
Vian1g00524 1092 CDD LysM 1070 1091 IPR018392 -
Vian1g00524 1092 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 81 223 IPR019448 -
Vian1g00524 1092 MobiDBLite consensus disorder prediction 34 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00524 Vian-Chr1 4963431 4966928 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00524 - - vra:106766502 1959.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00524 1 4963431 4966928 Vian1g00524 1 4963431 4966928 ECH
Vian1g00524 1 4963431 4966928 Vian4g00330 4 3659925 3663574 PCT