Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00516 ATGGAGAAGTTGACACTTTTCAGAAACATCTCTCTCTCGCACACACGCACCACAACACAACCGTGTCAATTCCTCACTTTTGAAACAAGTTTCGGCAGAGTGAGAAACTTGCAGGGGAAAGGAATGGCTTCAACTTCAGCAGTTTCAATGTCTCTCCCACTAACTCACACCGCCCAGAAGAAGGTGGTGCCCACTTCCCAGGCATTGTTGAAGGCACCGTTATCTCTGCGAACTTCAAAGGGTGTGGCAGTGTCCAAACCCAATGGGAGGTTTGAGGTGAGGGCATCCATGAAAGAGAAAGTTGTGACGGGTTTGACTGCAGCTGCATTGACGGCTTCCATGATGGTTCCGGATGTGGCTGAAGCCGCCGTAACGCCTTCCCTCAAGAATTTCTTGCTCAGTATCGCCGCCGGTGGAGTTGTGGCTGTCGCGATTATCGGTGCCGTCATTGGTGTTTCCAACTTCGACCCCGTCAAACGAAGCTGA 486 0.5123 MEKLTLFRNISLSHTRTTTQPCQFLTFETSFGRVRNLQGKGMASTSAVSMSLPLTHTAQKKVVPTSQALLKAPLSLRTSKGVAVSKPNGRFEVRASMKEKVVTGLTAAALTASMMVPDVAEAAVTPSLKNFLLSIAAGGVVAVAIIGAVIGVSNFDPVKRS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00516 161 Gene3D Single helix bin 123 161 - -
Vian1g00516 161 FunFam Photosystem II psbX protein 123 161 - -
Vian1g00516 161 Pfam Photosystem II reaction centre X protein (PsbX) 124 161 IPR009518 GO:0009523|GO:0015979|GO:0016020
Vian1g00516 161 PANTHER OS07G0673550 PROTEIN 42 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00516 Vian-Chr1 4892620 4893156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00516 - - vra:106767477 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00516 1 4892620 4893156 Vian1g00516 1 4892620 4893156 ECH
Vian1g00516 1 4892620 4893156 Vian4g00337 4 3748893 3749252 PCT