Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00503 ATGCTACCATTCAACCAAGCTACCCTAACTCCTAAACCCCTCAATCCCACTCCCTCACCCAACCACCACCAACCTCCACCACCACCACCACCACCACCACCACCACCACCACCACCACCACCTTCCTCTTCTTCTTCCACTACTCGAACCATGACGAACACCAATCCAATTTTAGATTCTAATCCTCCAAACCTCGAAGGAGATTCCGATTCTGATATTGACGCTCTCATCAATGCTTTTTTCGAACCTAATCCCCAATTCCCCTCTCTCGATCAACTCCAAGGATCCACCTCCGATGCCAATGAATCATCTCTCAAGAGAGGATTAGACACCGGGGATGATTCTTCCCACGCACCAATTCCCCTCAAACGCAGTCGTATTGACAATGTCATCTTCCCCCGCGCTGATCTCCACGCCGCCTTTCAAATTCAAAACCCTACTCCTTCTCCTTTTCCTCTCTCTCAGCCTCTGTTGCATGCCGCCGCTACCAATGGAGACACTCAAGTTGTGGAAGGGCAGGGGAGGCGCCCGGTGTTTGACTCCGATTTTCTGTCCAGGGCTCTCCGTGAAGCTGAATCGGTCCTTCCGCAGAATTCAGGCGATAACGACGTTAACTTTGACGTGGAACCTGGTGATTTTAGTGCACCTTATCTATCGCTGAATGATTTTAGGAGGATTCGGAACATGGAGCGTTTCCGACAGATAGCGAAGGAAAGCGCCACTCACTATGCTCGATTCACGTCGGAGGAGACCGCAGACGAAAGGCCGTCGTCTTCTGCTGCGCCTCAGGGAATCGACGATTCCACATCTCCGTTTTCGATCTCGATGAAGGCGATCAAAGAGGGAGCGGCGAAAAAGAAGGGGCGTGAGACGTGGGTTGCGAAGAGTCAAAAGGGGGAGAAGAGGGTCTGTGTTCCCTCCTTGCAAGAACTGTGTCTCAAAATTCTCGCGGACAATGCTGATGCCATGGTTTCCCTTGAGGGTGTACCGGATGAGTTGAGGCACAAGCTTTGCAAACTGCTCTGTGACTCGAGAAAGATGAATAGTCACTTTCTTGAACTTCTTCTCAGCGGGTCTCCCACGGAGATTCGCCTGAGAGATTGCTCCTGGTTGACGGTGGAACAGTTCGCCGAATGTTTTCATTCGTGTGACACTGGAAGATTGGAGGTGCTGCAACTTGACCAGTGTGGAAGGTGCATACCTGATTATGCATTATTTGGTCCTCTGAGACAGTCACCATGGTGGTTGCCAAGACTAGTTAATCTGTCCCTCAGTGGTGCATGCCGTCTTTCAGACAAGGGGTTGCATGTGCTAGTTTCTTCTGCCCCATCACTAAGATCAATTAATTTAAGCCAGTGCTCCCTTCTCTCATCTGTCAGTGTCAATATTTTGGCGCATTCGTTGGGATCTCTACTGAAAGAGTTATATCTTGATGATTGCCTAACCATTGATGCTGCACAAATTGTGCCGGCATTGAAGAAACTCGAACATTTAGAAGTGTTGTCATTGGCTGGAATTCAAACTGTCTCTGATGAATTTATCGGGGATTACATCACTGCACGTGGTCACAACATGAAGGAGCTTGTTTTAAAGGACTGTAGAAAATTAACAAATGCATCAATAAAAGTCATCGCCGAGCACTGTCCCGAGTTGTGTGCACTCGATCTTATGTATTTGGACAACTTGACGGATATATCCATGGGATATCTTACGAATAACTGTCGAGTACTCCATACATTGAAGCTCTGCCGTAATCCATTCAGTGATGAAGCAATTGCTGCATTTTTGGAGATTGCTGGAGGGTCCTTAACAGAACTTTCACTTAATAATATTAAGAAGGTTGGGCACCATACAGCCTTATCTCTTGCTAGTCATTCAAAAAATTTGCATACTCTAGATCTGTCTTGGTGCCGAAATTTGACAGACAATGAGTTGGGTTTGATTGTAGATAGCTGCTTCTCACTGAGGTTGCTTAAACTTTTTGGATGCTCACTGGTAACAGATGTCTTTCTCAATGGGCACTCAAACCCAGAGATTCAGATCCTAGGATTGAAGATGGCTCCTTTATTGCAAAATGTCAGAATGCTTGATACCTGTGAAGGTCCTTTGCGTTACTCACCAGTCTCGGTAGATTTGATATATAAATGA 2148 0.4693 MLPFNQATLTPKPLNPTPSPNHHQPPPPPPPPPPPPPPPPPSSSSSTTRTMTNTNPILDSNPPNLEGDSDSDIDALINAFFEPNPQFPSLDQLQGSTSDANESSLKRGLDTGDDSSHAPIPLKRSRIDNVIFPRADLHAAFQIQNPTPSPFPLSQPLLHAAATNGDTQVVEGQGRRPVFDSDFLSRALREAESVLPQNSGDNDVNFDVEPGDFSAPYLSLNDFRRIRNMERFRQIAKESATHYARFTSEETADERPSSSAAPQGIDDSTSPFSISMKAIKEGAAKKKGRETWVAKSQKGEKRVCVPSLQELCLKILADNADAMVSLEGVPDELRHKLCKLLCDSRKMNSHFLELLLSGSPTEIRLRDCSWLTVEQFAECFHSCDTGRLEVLQLDQCGRCIPDYALFGPLRQSPWWLPRLVNLSLSGACRLSDKGLHVLVSSAPSLRSINLSQCSLLSSVSVNILAHSLGSLLKELYLDDCLTIDAAQIVPALKKLEHLEVLSLAGIQTVSDEFIGDYITARGHNMKELVLKDCRKLTNASIKVIAEHCPELCALDLMYLDNLTDISMGYLTNNCRVLHTLKLCRNPFSDEAIAAFLEIAGGSLTELSLNNIKKVGHHTALSLASHSKNLHTLDLSWCRNLTDNELGLIVDSCFSLRLLKLFGCSLVTDVFLNGHSNPEIQILGLKMAPLLQNVRMLDTCEGPLRYSPVSVDLIYK 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00503 715 FunFam RNI-like superfamily protein 298 516 - -
Vian1g00503 715 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 36 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 253 271 - -
Vian1g00503 715 SUPERFAMILY RNI-like 359 668 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 13 44 - -
Vian1g00503 715 Gene3D Ribonuclease Inhibitor 518 599 IPR032675 -
Vian1g00503 715 MobiDBLite consensus disorder prediction 1 71 - -
Vian1g00503 715 FunFam DNA repair protein rhp7 isoform A 602 701 - -
Vian1g00503 715 SMART LRR_CC_2 600 625 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 574 598 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 626 651 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 442 467 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 548 573 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 522 547 IPR006553 -
Vian1g00503 715 SMART LRR_CC_2 416 441 IPR006553 -
Vian1g00503 715 PANTHER UNCHARACTERIZED 306 487 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 85 105 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 243 271 - -
Vian1g00503 715 Gene3D Ribonuclease Inhibitor 323 517 IPR032675 -
Vian1g00503 715 Gene3D Ribonuclease Inhibitor 600 699 IPR032675 -
Vian1g00503 715 MobiDBLite consensus disorder prediction 106 121 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 45 67 - -
Vian1g00503 715 MobiDBLite consensus disorder prediction 83 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00503 Vian-Chr1 4771430 4775460 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00503 K15082 - gmx:100798274 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00503 1 4771430 4775460 Vian1g00503 1 4771430 4775460 ECH
Vian1g00503 1 4771430 4775460 Vian4g00349 4 3908837 3913672 PCT