Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00429 ATGGAGGAAATTAACGTGTTGGAAGCTAAGGATGGGACTGTCTCAGTAGCTTCTGCATTTGTTGGTCACCAAGAAGTTGTGCAGGATACAGACCACAAATTTGTAACGAAAGCTGTTGAAGAAGCATATAATGGGGTAGATTGTAAAGATGGAGGCCCATTTGGTGCTGTTATAGTTCGTAAGGGTGAAATAGTTGCTAGTTGCCACAACATGGTTCTGAGAAACACAGATCCAACTGCTCATGCTGAGGTGACAGCAATAAGAGAGGCATGTACGAAGCTTAACCAAATAGAACTTTCAGACTGTGAAATATTTACTTCCTGTGAGCCTTGCCCCATGTGCTTCGGTGCAATCCACCTTGCACGCATTAAGAGATTAGTTTACGGTGCAAAGGCTGAGGCAGCAATTGCTATCGGGTTTGATGATTTTATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAACACTGGAAATCAAAAGAGCTGATGGTAATGAGGCCGTGATTGCTGAAGAGGTCTTTGAGAAAACAAAGACAAAATTCCAAATGTATTAG 561 0.426 MEEINVLEAKDGTVSVASAFVGHQEVVQDTDHKFVTKAVEEAYNGVDCKDGGPFGAVIVRKGEIVASCHNMVLRNTDPTAHAEVTAIREACTKLNQIELSDCEIFTSCEPCPMCFGAIHLARIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKATLEIKRADGNEAVIAEEVFEKTKTKFQMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00429 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Vian1g00429 186 Gene3D Cytidine Deaminase, domain 2 22 185 - -
Vian1g00429 186 CDD nucleoside_deaminase 38 142 - -
Vian1g00429 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Vian1g00429 186 FunFam tRNA-specific adenosine deaminase 29 185 - -
Vian1g00429 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 24 133 - -
Vian1g00429 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Vian1g00429 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00429 Vian-Chr1 3958122 3960677 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00429 - - gmx:100820230 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00429 1 3958122 3960677 Vian4g00414 4 4733944 4735365 PCT