Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00278 ATGGCCGTCGTAACTAGCAACGGCAAGCGCCGCCAGCATTGGCTCTCCGTGGGTCACCACCTTCCATCTCCCAATTCCAAAAGGCTCAGACTGTCGGCAACATCCGGCAACCACCCGCACTCTGTGTTATCCTCGAGTAGTATCGTTTCCAGAATTTCCAAATATCCTGAAGCCAAGCCACTGGGGCGTAGGGAGGTTCACGCGCCGTGTAGACCCCGTAAGTTTGGTTTTCCTACCTTTAATAGAATGAAATCGAGCTTGAATGCCAGTAGTAGTTATTATGATCGCAAGGAAGAGATTGTTAATGATATGGGCAACACGCTGAGTGAAAATTACGAAAGGGCGAAGAATTCAGCGTTAGCTAGCATTAGGTTTGGGGAAAAGGGTAAGGAGGTGATAGAAGTGGATGATGGTAGTCCCAAGGGCATGGTTTCCGAAGATTCAGGTGTGGAGGAGGTTCGTTTTAGGGAAGATGGACGGGATATGCGCTCTGTGGTGACGGAGCACAAATGGCAAGAGGGTGATTTGGTTGTGACTGAAGTGAAGGATTTGAAAGCTAAGGATGTGCGTGGCGGTCCTCAGCAGCTGTCAACTTCATCTGTGGTTTCGGAGTTGACTAACGGCGATTTGAATGTTGTTAATGCTGTGAAGATGTTCGGCACTCTGTCTTTAACTCCCGAGCGTGATCTTTCGGATGTTCATGCTTACAAGAAGTTGCTTGAGGCTGTTGACAAGCGCTCGGATACGCTTAAGAGGCTGTCGGCTGAAATTAAGCTTAACGAGAAGCGTAGGTCCACATTTGAATTGTTGCGCCCGAAGAAGGAACTAGTACAGGAAGTGCCATTTGAACCTTTTATTCCTCTTACTGAAGAGGAAGAAGTTGAGGTTACACGTGCCTTTTCTGCCAACAGGAGGAAGATCTTGGTTGCCCATGAGAAATCTTGCATTGAGGTCTCAGGAGAAAAATTTCAATGCCTTAGACCGGGTGCATGGTTAAATGACGAGGTAATAAATTTGTACCTTGAATTGCTAAAAGAAAGGGAGAGAAGAGAGCCCCAGAAGTTTCTGAACTGTCATTTTTTCAATACCTTTTTCTACAAGAAGTTAATAAGTGGCAAGAGTGGTTATGATTTCAAATCTGTGAGGAGATGGACCAGCCAAAAGAAACTGGGATATGGCCTACATGAATGTGATAAAATTTTTGTTCCTATCCATAAAGAGATCCATTGGTGCTTGGCTGTTATCAATAAGAAAGAGAAGAAATTTCAGTACTTGGATTCACTGAAAGGAATAGATACCCATGTGATGAAAGTTCTGGCTAGCTATATTGTAGATGAAGTAAAGGACAAGACTGGAAAAGATATTGATGTAAGTTCTTGGGAAAAAGAATTTGTTGAAGACCTTCCTGAGCAGCAGAATGGGTATGATTGTGGGGTTTTTATGATCAAATACGCTGACTTCTATAGCAGAAACTTGGAGCTGTGTTTCAACCAGGAACACATGTCGTACTTCCGGCGCAGAACAGCTAAGGAAATCTTGAGATTAAGAGCTGACTGA 1557 0.4432 MAVVTSNGKRRQHWLSVGHHLPSPNSKRLRLSATSGNHPHSVLSSSSIVSRISKYPEAKPLGRREVHAPCRPRKFGFPTFNRMKSSLNASSSYYDRKEEIVNDMGNTLSENYERAKNSALASIRFGEKGKEVIEVDDGSPKGMVSEDSGVEEVRFREDGRDMRSVVTEHKWQEGDLVVTEVKDLKAKDVRGGPQQLSTSSVVSELTNGDLNVVNAVKMFGTLSLTPERDLSDVHAYKKLLEAVDKRSDTLKRLSAEIKLNEKRRSTFELLRPKKELVQEVPFEPFIPLTEEEEVEVTRAFSANRRKILVAHEKSCIEVSGEKFQCLRPGAWLNDEVINLYLELLKERERREPQKFLNCHFFNTFFYKKLISGKSGYDFKSVRRWTSQKKLGYGLHECDKIFVPIHKEIHWCLAVINKKEKKFQYLDSLKGIDTHVMKVLASYIVDEVKDKTGKDIDVSSWEKEFVEDLPEQQNGYDCGVFMIKYADFYSRNLELCFNQEHMSYFRRRTAKEILRLRAD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00278 518 ProSiteProfiles Ubiquitin-like protease family profile. 316 488 IPR003653 GO:0006508|GO:0008234
Vian1g00278 518 FunFam Ubiquitin-like-specific protease ESD4 275 516 - -
Vian1g00278 518 Pfam Ulp1 protease family, C-terminal catalytic domain 331 512 IPR003653 GO:0006508|GO:0008234
Vian1g00278 518 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 130 511 - -
Vian1g00278 518 MobiDBLite consensus disorder prediction 1 45 - -
Vian1g00278 518 SUPERFAMILY Cysteine proteinases 284 516 IPR038765 -
Vian1g00278 518 MobiDBLite consensus disorder prediction 27 45 - -
Vian1g00278 518 Gene3D Adenoviral Proteinase; Chain A 276 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00278 Vian-Chr1 2454296 2460149 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00278 K08592 - gmx:100797013 792.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00278 1 2454296 2460149 Vian1g00278 1 2454296 2460149 ECH
Vian1g00278 1 2454296 2460149 Vian4g00133 4 1237816 1244104 PCT