Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g00252 ATGCAACGCAATAGTACTGCTGAGTTGGAGGAAGGAGAGGCTTTCTATTGTTATGAGGATGAGGATGATGACAACATTGACCTTGATTCTCTCTCTTACATTGATGAGAGGATTCAGCATGTTCTGGGTGATTTCCAAAAGGAATTTGAAGGAGGTATTTTTCCCGAGCGTTTGGAAAACAGCCAAAAGGAAAGTGAAGATTCGCCACACGTATCTCAAGAGATGCCTGAAGAATCTTGCACAAGCATTGTTCAGATTATGACTTCTTTCACTGTCCCTGGAGGTGTGCTAATATCACCTCTACATGACAGTCTACTCAACTTGATTAGAAAGGGAAAAGGCCTTGGAGACAGTAGACCCATGTCTTCTCTTAATGGTCATCAGGAGCATTATTCCATGTCTACTGATGAATCAGATTCCTTGGTTGGGGATTCACATTTGTTGAAGAAAAGGAAACTGACAGTGGTAGACCAAAGTGAAAAGCATCATATGAATGGTAACTGTTATGAGAACGACATGACATTTCATACGAAGAAAAGATTAGCAAATAGAACTCCAGATCGTAAGGACTTTCTGTCTAATGGTCTGAGATGCACACCACTGTCAAGTTCAATTTGTGATGCTGGTGAAACAGCAGAAGTCGCTGGTAAGGCTATTGAAGTATCCAAGGAGGTCAATAAAAATGGTGTGGAATGTAGAATGGGTTCCATAGAAGTAGTGAAGGAGGTTTCATTGGAGTCAATATCTGATCAGGATTTTGACAAGGTTGTGAAACGAAATACAGGAAGTAGCTTTGGGAAAAAAGTGTTAAAGCATAAAATGGAAATGTCTCAGGATAACAATTCTGCTGATCCTAAGAATAGTAGAAAGTGTAACACTTCTGCTATTTCGAAAAGGGTTAACTCTAATGAAATGAAACGTAAGGTGGATCAAGATACTCAAAAGTTTGAGACTAATCAGACCAAGGTAAAATCTGCAAGCAAGAACAACTTAAAAGGCGAACAGGGACCTGGAAAAGTTGTGGCCGATGCCAAAAAAGGTGTCACTGGTTCTAGTAATAAAGCAATGGTAAATGATAGAAAGAGTACTGGCATTGGTGTTATTTCTTCTAAAAATGAAATGCATAAAATGAAACTGATGGATAATAAGGTGAGAGATTGTGACAGAGGTTTACTGAAAAGAAAAAAATTACAATTGAAGCTTGATGGAATAGATCCAACTGATGGGCCTCCCCTTAATAAGGATACAGTAAATGCTGACCTTTACCATGTTAAAAAGAGTGCAAATGAGGTTAAAGTAAAGGAAAAACCAAGTGGCAATAAAGTTGTTTATCAGTTGTCTGCTGTGCCATGCGTAAAAGATGCTCCAGGCACATTTCCTGTTGCTGAAAATAAACCCACTTCTGAGATGGTTCTGTCGGCAGCAGCAGCACCTCAACTTATTGAAGAAGATTGGGTTTGCTGTGACAGTTGCCAGAAATGGCGGCTTCTACCTATGGGTTTAAAGCCAGAGCAGCTTCCAGAGAAATGGTTGTGTAGCATGCTATATTGGCTGCCTGGAATGAATCGGTGTAACATCAGCGAGGAGGAGACAACAAAATCACTTTATGCTTTATATCAAATGCCGATTTCTGAGGGTCAAAATAACATGCAAAGCCATGTCACTGGACCCGAAATTGGAGTGAAGTCTGTTGATACTCTACAACTTTGCCATGTTGACAAAAAGTCCAGTTCTGATGTAATGCTTGACCGGGGAAACAAGAAACATGGTATTAATGAAAAGGCAAAGCCAGGACTCAACATTGACAGGCATCAGTTGTCAAATACAGTAAAGAATGGTCAACAGTCAAATGTTAAAAATAGAAGCTTGAATGACATGAATCAGCGGTCTGCAGACTCAAACCGTATGAAGAAATCTAATTCTCAAAATTTGAACAGGTTGAACAATTTGATAGAAGATAAAAAAGCGCTTAAGGCAAAAGAATATCAAATTAATGGAGGTGACAAACAGGTTAGATTGAAGCGTAAGATGGAGGATAATCAACATGGATCTGGAACTCATAAGAAATCTAAGATTGAAGTTGTTGGCAATGCTGATAAACATCTGAAACACGGTATGGACTATAAAAAGATGGGTCTAAACTCAAGAAATGACTTACCAACAAAGGCTAGTGGGGAAAATACGACGAAATATGATGATTATTGTTCGTCTGATGATAACAAGTTTGTAGTTCCGGTAAAGAAGGGAGATCGGGCACAGTTTTCATCTGATGATGGTTCGTTGGATGCTACAAATAGTAGGCAAAGTGGTTCGGTCAAAGAAAGAAAAATGAGTGACTGGCGGGATAATGAGAAACATAACAAAACATTGTATATGGAAGGTGACATGCATCGTGTTAAAAACATCAATGTAAATAAGAAACAGAAGAAGTATACAGTTTTGAATACAGAGGCAAAACCAGTAATTGAAAGTGATGACGAATTTATTAAAGAAAGTGAGATGAAGCGTGCTTTCTTGCCAGACAGCAGGGACAAAATGTCTACTGGGACAGAGGTGAAAAGTGATATCAATATGGCCCACCAGCCTAGAAAGCACAAAAAAAATGTTGCTTCTTACCAAGCTTTGGATTGTTTTGATACATCGGGTGGGGATTTAGGCTCTGGAAAATTTTCATTGGCAGCAACTTCAAGTTCTTCTAAGGTTTCTGGGTCTCACGAAGCTAGAACTAAGCTTGAAAAGGCCATAGGCTCACCAGTAGAATCTGTTACCTCATCACCTTTGAGGACTTCCAACATCGAGAAATGTACTTTTGCTGCAGGGTTGGACACATCAGAAAAAGATGATGCTAGAAAAGGTGGTTTATCAATAAAAAAATTAGATAGTAGGGAGAAAAAGTTATCAGTAAAAAAGGAGAGAGTTTCAAATGACATACATCTTGCACGTGTTAATTGTGGCAGTGGTTCACATCATGAAGAGAAAATGAACAAGAGTAATAAGGAAAATGCACTTTCTTGGCAGAAATCTGGTAGGCTCACATCATTACGGGTGAAGCAAAAGGTTAGAACTTCTGGTTCTGAGGTGAGTAGGGATAAGATGAAGGTTTCAGTATCAGCTAATGATTTTTCCAAAAATGGTGTGAGTTATGACTCAGCAGTTCATCCTAATAATCACACTTCTGGTACTGAGACAAGTCATGATGTTAAGAACGTCTTTCTGAAGTCTAAACACAATATTGACAACCTTAGCAAGCAAAATCCTTCAAGGGATTGGTCAGATGAAACTGGAAAACAAACTGAGCCAAAACAAAATGATTTTGGGAATCCAATTTTGAAAAGGGAAACTTTACATTTGGGTTCTAGAACTGCACCCAAATCGCAAAAAGGAGATATGTCTATTGGGCATCCGGTCCATGCATCTGGCAACGGTGATGTTCCTAGGCTTGTGAGAAATGCAGTTGATGTTAGTTGCAAGGCTGGAGTTGATCACAGTTCAGGAAGTTTAGTACCTGACAGACAGCTCAGTGGGTCAAGTCCCGTGACAACAAATTCTAGCCAAACTGCCTCTGGCATTCTGGAAGAAGCCACAAACCTAAAGGATTCTGCAGATCATTATAAGAACTCTGGTTTTGAGTTTGAAAGTAACGAGACTTATTTTAAAGCTGCCTTAAAGTTTCTGCACGGAGCATCACTTATAGAAAAATCCCACCGTGAAAATAGCAAGCAGGGAGAGATGAATCAAATGCAAATTTATGCTGCTACAGCTAAACTTTTTGAATCCTGTGCCCATAAATATGAAAGACGCCAAGAAATGGCCGCAGCTTCCTTGGCCTATAAATGCATGGAGGTGGTATACATGAGATTGGTTTACAATAAACATTCTACCATAAACAGGGATCGTGATGAGTTAAAATCAATTCTACAAATGGTTTCTCAAGGTGAATCTCCTTCGTCTTCTGCATCAGATATTGATAATTTAAATAACGTGGGGGCAGTGGATAGGACTACTTTGACAAGGGGTTCTAGTACTCTTGCTGCTAACAATCAAGTCATATCTGCTCAGAATCGCCCAAATATTATCAGGCTTCTTGATTTTACTCAAGACATAAATTTTGCAATGGAGGCTTCCAGAAAATGCAAGAGCAGTTTCATGGCTGCTAATTTGAACATGGATGAAGCACGGAATAGGGATTGCATAACTTCGATTAGGAAGGTTATTGATTTCAGCTTCCAAGATGTAGATGAGCTTGTACATCTGGTGATGATAGCAACAAAAGCAATAACTCGAGCTGGTCTTGGTGGTGTTAGAGATTAA 4311 0.3925 MQRNSTAELEEGEAFYCYEDEDDDNIDLDSLSYIDERIQHVLGDFQKEFEGGIFPERLENSQKESEDSPHVSQEMPEESCTSIVQIMTSFTVPGGVLISPLHDSLLNLIRKGKGLGDSRPMSSLNGHQEHYSMSTDESDSLVGDSHLLKKRKLTVVDQSEKHHMNGNCYENDMTFHTKKRLANRTPDRKDFLSNGLRCTPLSSSICDAGETAEVAGKAIEVSKEVNKNGVECRMGSIEVVKEVSLESISDQDFDKVVKRNTGSSFGKKVLKHKMEMSQDNNSADPKNSRKCNTSAISKRVNSNEMKRKVDQDTQKFETNQTKVKSASKNNLKGEQGPGKVVADAKKGVTGSSNKAMVNDRKSTGIGVISSKNEMHKMKLMDNKVRDCDRGLLKRKKLQLKLDGIDPTDGPPLNKDTVNADLYHVKKSANEVKVKEKPSGNKVVYQLSAVPCVKDAPGTFPVAENKPTSEMVLSAAAAPQLIEEDWVCCDSCQKWRLLPMGLKPEQLPEKWLCSMLYWLPGMNRCNISEEETTKSLYALYQMPISEGQNNMQSHVTGPEIGVKSVDTLQLCHVDKKSSSDVMLDRGNKKHGINEKAKPGLNIDRHQLSNTVKNGQQSNVKNRSLNDMNQRSADSNRMKKSNSQNLNRLNNLIEDKKALKAKEYQINGGDKQVRLKRKMEDNQHGSGTHKKSKIEVVGNADKHLKHGMDYKKMGLNSRNDLPTKASGENTTKYDDYCSSDDNKFVVPVKKGDRAQFSSDDGSLDATNSRQSGSVKERKMSDWRDNEKHNKTLYMEGDMHRVKNINVNKKQKKYTVLNTEAKPVIESDDEFIKESEMKRAFLPDSRDKMSTGTEVKSDINMAHQPRKHKKNVASYQALDCFDTSGGDLGSGKFSLAATSSSSKVSGSHEARTKLEKAIGSPVESVTSSPLRTSNIEKCTFAAGLDTSEKDDARKGGLSIKKLDSREKKLSVKKERVSNDIHLARVNCGSGSHHEEKMNKSNKENALSWQKSGRLTSLRVKQKVRTSGSEVSRDKMKVSVSANDFSKNGVSYDSAVHPNNHTSGTETSHDVKNVFLKSKHNIDNLSKQNPSRDWSDETGKQTEPKQNDFGNPILKRETLHLGSRTAPKSQKGDMSIGHPVHASGNGDVPRLVRNAVDVSCKAGVDHSSGSLVPDRQLSGSSPVTTNSSQTASGILEEATNLKDSADHYKNSGFEFESNETYFKAALKFLHGASLIEKSHRENSKQGEMNQMQIYAATAKLFESCAHKYERRQEMAAASLAYKCMEVVYMRLVYNKHSTINRDRDELKSILQMVSQGESPSSSASDIDNLNNVGAVDRTTLTRGSSTLAANNQVISAQNRPNIIRLLDFTQDINFAMEASRKCKSSFMAANLNMDEARNRDCITSIRKVIDFSFQDVDELVHLVMIATKAITRAGLGGVRD 1436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g00252 1436 MobiDBLite consensus disorder prediction 578 642 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 717 731 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 280 300 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 757 771 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 121 140 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 1076 1144 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 602 642 - -
Vian1g00252 1436 ProSiteProfiles Zinc finger CW-type profile. 479 532 IPR011124 GO:0008270
Vian1g00252 1436 PANTHER CW-TYPE ZINC FINGER 3 58 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 1159 1187 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 751 785 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 667 693 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 903 926 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 1167 1187 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 301 317 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 318 332 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 57 79 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 578 600 - -
Vian1g00252 1436 Coils Coil 640 660 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 57 73 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 275 341 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 117 140 - -
Vian1g00252 1436 MobiDBLite consensus disorder prediction 710 734 - -
Vian1g00252 1436 Gene3D - 478 534 - -
Vian1g00252 1436 Pfam CW-type Zinc Finger 485 530 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g00252 Vian-Chr1 2211164 2218886 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g00252 - - gmx:100793863 1911.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g00252 1 2211164 2218886 Vian1g00252 1 2211164 2218886 ECH
Vian1g00252 1 2211164 2218886 Vian4g00157 4 1409867 1417729 PCT