Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00647 ATGGAGTTTCAGCTTCACCCAAAGCTCAACTTTCTTTTATGCTTATTCATCCTTACCCTTTCATTTACCAACGCTCAAGCTACTACCTTTGGATACTGCGCTGATGTGAACTATGTCGTGAAGGTGTCTGGAGTTGAAATCACACCAGACCCTGTTGTTCGTGCTAGGCCTGTAACCTTCAAAATTTCTGCTGCTACTGATTCGCTGAATGCAGGTGAAGCTATTTATGGAGGAAAGTGGGAAATTACAGTTTCATACTTCGGATTTGTTGTCCATAAGGAAATCCATGATTTTTGTGAGCAAGTATCTTGCCCTGTTGCTACTGGCAATTTTGTGGTTGCTCACACCCAAAAGTTGCCTGCATTTGCCCCACCGGGCACCTACACCGTGGAGATGACACTAAAAAACGAAAAGAACAAGCCATTAACTTGCATCACCTTTAATTTAAAGATCGGTTTGGGATCTTTTCTGTCTAATATCTGA 483 0.4224 MEFQLHPKLNFLLCLFILTLSFTNAQATTFGYCADVNYVVKVSGVEITPDPVVRARPVTFKISAATDSLNAGEAIYGGKWEITVSYFGFVVHKEIHDFCEQVSCPVATGNFVVAHTQKLPAFAPPGTYTVEMTLKNEKNKPLTCITFNLKIGLGSFLSNI 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00647 160 PANTHER NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED 9 151 IPR039670 GO:0015918|GO:0032934
Vian11g00647 160 Pfam ML domain 28 151 IPR003172 -
Vian11g00647 160 SUPERFAMILY E set domains 27 151 IPR014756 -
Vian11g00647 160 CDD PG-PI_TP 30 147 IPR033917 GO:0032366
Vian11g00647 160 SMART pgtp_13 30 149 IPR003172 -
Vian11g00647 160 Gene3D - 28 152 - -
Vian11g00647 160 FunFam Putative phosphatidylglycerol/phosphatidylinositol transfer protein isoform A 28 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00647 Vian-Chr11 6693306 6695499 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00647 - - gmx:100818265 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00647 11 6693306 6695499 Vian11g00647 11 6693306 6695499 ECH
Vian11g00647 11 6693306 6695499 Vian5g00964 5 30935944 30940961 PCT