Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00562 ATGCTAGCAATGGGGGAATTCAAACACTTTGTAATTGTTAAGTTCAAGGAAGGTGTGGCAGTTGATGAGCTCACTAAAGGGATGGAGAAGTTGGTCTCAGAGATTGATGCTGTCAAGTCCTTTGAATGGGGAAGGGACATTGAAAGCTTAGATGTGCTGAGACAAGGTTTCACTCATGCCTTTTTAATGACATTCAACAAGAAAGAAGACTTTGCTGCATTTCAAAGCCATCCAAATCATGTGGAGTTCTCCACAACATTTTCAGCAGCAATTGAGAACATTGTGCTGCTGGATTTCCCATCTACTCTTGTCAAGGCCCCAGCATGA 327 0.4251 MLAMGEFKHFVIVKFKEGVAVDELTKGMEKLVSEIDAVKSFEWGRDIESLDVLRQGFTHAFLMTFNKKEDFAAFQSHPNHVEFSTTFSAAIENIVLLDFPSTLVKAPA 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00562 108 SMART Dabb_2 7 101 IPR013097 -
Vian11g00562 108 ProSiteProfiles Stress-response A/B barrel domain profile. 7 99 IPR013097 -
Vian11g00562 108 Gene3D - 3 108 - -
Vian11g00562 108 SUPERFAMILY Dimeric alpha+beta barrel 4 101 IPR011008 -
Vian11g00562 108 PANTHER - 5 102 IPR044662 -
Vian11g00562 108 Pfam Stress responsive A/B Barrel Domain 8 100 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00562 Vian-Chr11 5670815 5671475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00562 - - gmx:100306664 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00562 11 5670815 5671475 Vian11g00562 11 5670815 5671475 ECH
Vian11g00562 11 5670815 5671475 Vian5g01068 5 32440250 32441359 PCT