Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00516 ATGGCATCATCGTCCTCAAGGTTCCTCTACACATGTCTGTCTTTTATGTTCTTCTTTCTCATCTCCAATAGCATTCCACCTTCTTTCTCCTCTCCAACTCACCACACAAACAGCGAACTTAGTTTTTCTTCAACGGCAGAAAAACTCATAAGAGGGTTCAACCTCTTCCCCAAAGACCCCATTAACACACTCGAGAGTGACTCTCTTCTTGTGGCAGGAAACATTGTGGAGAAGAAGTTAACTTTTCCTAGCCTTGTTGCTCCAGGGTCTTCTGTGGAAGAACTTGGTCACCATGCAGGCTATTATAGCCTTCCTCGTTCTAAAGCTGCAAGGATGTTCTACTTTTTCTTTGAGTCTCGAAACAGAAAGGATGACCCTGTTGTCATATGGTTGACTGGCGGACCAGGATGTAGCAGTGAACTAGCTTTGTTTTACGAAAATGGTCCTTTTCAGCTTACCAAGAACTTGTCCCTTGTGTGGAATGACTATGGTTGGGACAAGGCATCAAATATTATATTCGTTGATCAACCCACTGGAACAGGGTTCAGCTATACTTCTGATGAGAGTGACATTCGCCATGATGAAGAGGGTGTTAGCAATGATTTGTATGACTTCTTGCAGGCATTTTTCAAGGAGCACCCTCAATTCACTAAGAATGACTTTTATATTACTGGAGAGTCATATGCTGGACACTACATTCCAGCTCTTGCATCCAGGGTTCACCAAGGAAACAAAGCAAAAGAAGGAATTCATATAAATCTAAAGGGTTTTGCTATTGGTAATGGGTTAACCAATCCTGAAATTCAGTACCAGGCATACACAGACTATGCATTAGACAGAGGACTAATTCAAAAGGCTGATTATAATAGCATCAACAAGTTGCTCCCATCATGCAAGCAGGCCATAGAAGATTGCGGCACTGAAGGTGGAGAAACCTGTGAAACTTCATTATATGTCTGCAATAAGATATTCAATAGGATAATGAACATTGCTGGAGATGTTAATTACTATGACATTAGAAAGAAATGTGTGGGAGATCTGTGTTATGACTTCTCTGAGATGGAGGAATTCTTAAACAAGAAGACAGTGAGAGATGCTTTAGGTGTTGGGGACTTGGACTTCGTTTCATGCAGTAGCACAGTGTATAGCGCTATGATGCAAGACTGGATGAGAAATCTAGAAGCGGGTATTCCAGCACTTCTAGAGGATGGAATCAAGGTGCTTGTGTATGCTGGAGAAGAAGATCTCATATGCAATTGGCTTGGGAATTCAAGGTGGGTTCAAGCAATGGAGTGGTCTGGTCAAAAAGAATTTGGGGCGTCTGGTGCAGTCCCATTTCTGGTGGATGGTGCAGAAGCAGGCACGCTGAAAAGCCATGGACCTCTCGCTTTCCTGAAGGTATACGAGGCTGGTCACATGGTGCCTATGGATCAACCAAAAGCTGCACTTACAATGCTAAGAAGCTGGATGCAAGGGAAACTGACAATGACAAAGAATGGGGATAACGTCTCTCCTAAATGA 1521 0.4293 MASSSSRFLYTCLSFMFFFLISNSIPPSFSSPTHHTNSELSFSSTAEKLIRGFNLFPKDPINTLESDSLLVAGNIVEKKLTFPSLVAPGSSVEELGHHAGYYSLPRSKAARMFYFFFESRNRKDDPVVIWLTGGPGCSSELALFYENGPFQLTKNLSLVWNDYGWDKASNIIFVDQPTGTGFSYTSDESDIRHDEEGVSNDLYDFLQAFFKEHPQFTKNDFYITGESYAGHYIPALASRVHQGNKAKEGIHINLKGFAIGNGLTNPEIQYQAYTDYALDRGLIQKADYNSINKLLPSCKQAIEDCGTEGGETCETSLYVCNKIFNRIMNIAGDVNYYDIRKKCVGDLCYDFSEMEEFLNKKTVRDALGVGDLDFVSCSSTVYSAMMQDWMRNLEAGIPALLEDGIKVLVYAGEEDLICNWLGNSRWVQAMEWSGQKEFGASGAVPFLVDGAEAGTLKSHGPLAFLKVYEAGHMVPMDQPKAALTMLRSWMQGKLTMTKNGDNVSPK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00516 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 462 475 IPR001563 GO:0004185|GO:0006508
Vian11g00516 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Vian11g00516 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Vian11g00516 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 209 234 IPR001563 GO:0004185|GO:0006508
Vian11g00516 506 Gene3D alpha/beta hydrolase 76 504 IPR029058 -
Vian11g00516 506 FunFam Carboxypeptidase 84 502 - -
Vian11g00516 506 Pfam Serine carboxypeptidase 94 492 IPR001563 GO:0004185|GO:0006508
Vian11g00516 506 SUPERFAMILY alpha/beta-Hydrolases 97 493 IPR029058 -
Vian11g00516 506 ProSitePatterns Serine carboxypeptidases, serine active site. 223 230 IPR018202 GO:0004185
Vian11g00516 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 93 479 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00516 Vian-Chr11 5123616 5126983 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00516 K16298 - gmx:100785987 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00516 11 5123616 5126983 Vian11g00516 11 5123616 5126983 ECH
Vian5g01130 5 33340229 33342472 Vian11g00516 11 5123616 5126983 PCT