Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00380 ATGGTGTTGCAGAAAAGGTCATGTTATAGCTTTAATGGACATCAGGTGCCAACCAAGCGCCGAGCTACTAGATTAGCTAGGAGAAACGCTACATTTCAAAGAAGGTTGGAAGAGAAACAAATGTGTGCATTTGACTTATTGGCCACCGTAGCTGACAATTTATTGCAAGGGAAACAGAATCCTACCACATGTAGTGATAGTTCATTGGAAAAAGATAGGGATGGATTTGTAGAAGAGGAGTGCCAAGATGCAAATAAACCATTAAAAACTGAGCTTTCTGATGAAGCAAGTTGTGACAGAAGATGTCAGCATGACTTTGTTAAAGAAGGATGCACAGATGCAAATAAACCATTAAAAGCTGAGCTTTCAGACGAAGGAAGTAGTGATAGAAAATGTTTCTCTAATATTTCTTCCCAAGTGTACAATCAAAATTGTTGTTTGAAGGAATTCGCAGTTCATGAAATTGAAGGTCATTCATGCATTGCTTCTATAGTAACAAGTTCTAGTTGCTCAGAGAAGTTTGTTGCTGAAACACTGGTGGATGGAAAAGGCCAAAACGGAACTGAAAATTTAGCTAGCAAAGTTGAATTAGGTTCTTCTCGAAGCCCAGAGAGTATTGGTTTCAAGTTAGATGGTGATGTAAGTAAAGTAAAAGATGTTAAATTTGGGAAGGTTCCCATGGATACTGGGACTGGGTTGTGCTGTTCTGAGGATCTCTTGGATGAAAAACCTCCAGCACTGGTAAGTTCTTGTTGCAATGCCAAGTTGTCTGGGTCTGACGACAGCATGCCTCATAGCTCATTGTCCAAAGGTTGTGACAATGTACTAGTAGATAGTAGAGATGATGACGAAAAATTTTCTGGGTGTGCTCACCCTAGTACCAAAATAAAGTCCTCTAGACCAATTACTTGTATAGATGATAGAAAAATAAACAAAAGATTGGCTTCAAAATATCTTAAAGTTGCTCAAGAATCCAAGCCTGATAAATTATCTAATAGTGTTTTGGATGGCAATTTGAAGCCAGTTTACAGCAATAGGAAGAACTACTACAAAAGCCAAAGATCTGAAATGAACATTCCTTTCAAAAAGAGGAAACTTTTTAAATGTAGCTCTGATACAAATTCTAACGGATATATTAGAAATGGTGACACTTATTTTTCACTCAAGAATGAAACGAATCAAAGTGTTTCATATTCATCTTCCGGGATGAGCAAAGATCATGGAACATCATCCTTGGGGCACTCTGCATTACGGTCTAGAGATTCTCATGTGAAGCTTAGGATCAAATCATTTAGAGTGCCCGAGCTTTTTATTGAGATTCCAGAAACTGCAACCATTGGGTCCTTAAAGAGGACAGTGATGGAGGCAGTGACTGCAGTACTCGGAGGTAGATTACGCGTGGGAGTGATTCTCCATGGGAAGAAAATTAGAGATGACAGTAAAACTCTACTCCAGACTGGAATTTCTCATGATAACCACCTGGATGCTTTGGGATTCGCCTTGGAGCCTAATTTTTCACAAAATCTACCACCTGCATGTGCAACTAGTTCTCTTCGCGTTCCTACTGCGGATGTGCCTCAACCTTTTACTGGGTATCCTTCAATTCCTGCTGTAATTCATCAAAGGATTCAGGGGTTTTCTAACATGTTAGCTGAGCATCAAGTAACAGGTTTAGGTAACCTCGTTGAAAGTGATCATGATTCAGCTCCTTCTCCCATCAACACATCAGGTGAAAAAAAATTGTCAGATTCTAAAGAACTTGTTCCTGAAATGGGTATGGAGGCACTAGCTGTGCTACGTGGGCATCAAAAGTCAAAGCGAACCAAAATCGCACAGCGCCGTATTCGTAGGCCTTTTTCTGTTGCTGAAGTGGAAGCATTGGTTCAAGCAGTTGAGAAACTTGGAACTGGAAGGTGGCGTGATGTTAAGCTTCGTGCTTTTGATAATGCAAAGCATCGAACATACGTGGATTTGAAGGATAAATGGAAAACACTGGTGCACACTGCAAGAATATCCCCTCAGCAAAGGAGGGGAGAGCCTGTCCCTCAGGAACTTTTGGATAGGGTTCTAACTGCCCACGCATATTGGTCCCAGCAGCAGACTAAGCAACAGCTCAAGCACCATTCAAAACCTTGCCTTCTCCTTTAA 2148 0.4069 MVLQKRSCYSFNGHQVPTKRRATRLARRNATFQRRLEEKQMCAFDLLATVADNLLQGKQNPTTCSDSSLEKDRDGFVEEECQDANKPLKTELSDEASCDRRCQHDFVKEGCTDANKPLKAELSDEGSSDRKCFSNISSQVYNQNCCLKEFAVHEIEGHSCIASIVTSSSCSEKFVAETLVDGKGQNGTENLASKVELGSSRSPESIGFKLDGDVSKVKDVKFGKVPMDTGTGLCCSEDLLDEKPPALVSSCCNAKLSGSDDSMPHSSLSKGCDNVLVDSRDDDEKFSGCAHPSTKIKSSRPITCIDDRKINKRLASKYLKVAQESKPDKLSNSVLDGNLKPVYSNRKNYYKSQRSEMNIPFKKRKLFKCSSDTNSNGYIRNGDTYFSLKNETNQSVSYSSSGMSKDHGTSSLGHSALRSRDSHVKLRIKSFRVPELFIEIPETATIGSLKRTVMEAVTAVLGGRLRVGVILHGKKIRDDSKTLLQTGISHDNHLDALGFALEPNFSQNLPPACATSSLRVPTADVPQPFTGYPSIPAVIHQRIQGFSNMLAEHQVTGLGNLVESDHDSAPSPINTSGEKKLSDSKELVPEMGMEALAVLRGHQKSKRTKIAQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLTAHAYWSQQQTKQQLKHHSKPCLLL 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00380 715 CDD SANT_TRF 617 667 - -
Vian11g00380 715 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 611 670 IPR017930 -
Vian11g00380 715 SUPERFAMILY Homeodomain-like 617 698 IPR009057 -
Vian11g00380 715 MobiDBLite consensus disorder prediction 564 583 - -
Vian11g00380 715 Gene3D - 604 708 - -
Vian11g00380 715 SMART sant 615 668 IPR001005 -
Vian11g00380 715 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 708 IPR031105 -
Vian11g00380 715 ProSiteProfiles Ubiquitin domain profile. 424 494 IPR000626 GO:0005515
Vian11g00380 715 SUPERFAMILY Ubiquitin-like 419 509 IPR029071 -
Vian11g00380 715 ProSiteProfiles Myb-like domain profile. 611 666 IPR001005 -
Vian11g00380 715 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00380 Vian-Chr11 3529030 3532879 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00380 - - gmx:100780881 1179.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00380 11 3529030 3532879 Vian11g00380 11 3529030 3532879 ECH
Vian11g00380 11 3529030 3532879 Vian2g02642 2 47192351 47195231 ECH