Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00197 ATGGACAAAATCCATTCCCACAGGCAGGTAGCTGTTATCAAACACTCCCTCTTCGATCAGGGATATTTGGATGAGCAGTTTATCCAACTGGAAGAATTGCAGGACGATGCTAATCCTAACTTTGTTGAGGAAATTGTTACTCTTTACTACCGTGATTCTTCTAGGCTTATCTCAAACTTGGACCACACACTGGAAAGGAACCCTCTGGATTTCAACAAGCTGGACACAATTATGCACCAGTTTAAAGGAAGCAGCTCAAGCATCGGAGCTAAAAAGGTGAAAGCGGAATGCACTCTGTTTAGGGAATATTGCAGGACAAGAAATGGAGAAGGATGCAGGAGGAGCTTCCAACAAATGAAGAAAGAATATGCAATACTGAGAAAGAAGCTTGAAACATATTTTCAGATGGCAAGGCAAGCTGGGCCCAAAGAGACAGCATTTCGGCCCAAGTAA 453 0.4305 MDKIHSHRQVAVIKHSLFDQGYLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLDHTLERNPLDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRTRNGEGCRRSFQQMKKEYAILRKKLETYFQMARQAGPKETAFRPK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00197 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Vian11g00197 150 FunFam Histidine-containing phosphotransfer protein 4 1 145 - -
Vian11g00197 150 Pfam Hpt domain 44 126 IPR008207 GO:0000160
Vian11g00197 150 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 7 143 IPR045871 GO:0000160|GO:0009927|GO:0043424
Vian11g00197 150 Gene3D HPT domain 1 146 IPR036641 GO:0000160
Vian11g00197 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 6 139 IPR036641 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00197 Vian-Chr11 1794549 1795608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00197 K14490 - gmx:100800310 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00197 11 1794549 1795608 Vian11g00197 11 1794549 1795608 ECH
Vian11g00197 11 1794549 1795608 Vian4g01787 4 34133136 34134696 ECH