Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00124 ATGGATTACTTTGTGAAGACCCTTTCAAGCATCAAACAGAAGGGTATTCGTGCAGACTTGATTGGTTCCATCATCACTCATTATGCTTCCATTTGGCTCCCTGATCTCTCTGCCTCTTCTGAGAATGGTGTCACCACTCAATTCCAATCCCCCGAAAGCGTCACGAGTTCATGGATGAAGAAGAGATTCTTTGTGGAGACCTTGGTGAATGTTCTGCCTCCTGAGAAGGATTCTGTCCCATGCAACTTCCTCCTTCGCCTTCTCAGAACCGCCAACATGGTTCGGGTTGATGCCACTTACAGAGCTGAGATTGAGGACCGCATTTCCTCGCAGCTAGATCAAGCTTCTCTCAAAGAGCTCATGATACCCTCCTTCAGCCACACGTGTGGAACTCTCTTAGATGTTGAGCTTGTCCTCAGGTTGGTTAAGAGGTTTATGAGTATGGACCGTGACGGTGCTGCTTTGGTTAAGGTTGCCAAGCTGGTTGATTGCTACCTCGCTGAGGCTGCTGTGGACGCCAATCTGTCCTTGTCTGAGTTCCATGCACTTGCTGGAGTTCTTCCCAACCACGCAAGAGCCACGGATGATGGGTTGTACCGAGCCATTGACACTTACCTTAAAGCACATCCAGGTGTGTTAAAGCAAGAAAGGAAGGGTCTGTGCAGACTGCTTGATAGCCGGAAACTGACACCAGAGGCCTCACTTCATACAGCTCAAAATGAAAGGTTGCCTGTGAGAGCTGTGATTCAGGTGCTGTTCTCTGAACAAGCCAAACTCAACCGGCAAGTAGATTGGAGTGGTTCCTTCAGCTTGAGGAGCCCAAATGACCCACCTGGAAGGTGCCTTTCAAAGCGAGAAATGAATGCTCAGCAACTGGAGATAACGAAGCTGAAGGAAGATGTTTACAGGCTGCAAAACCAGCTGAATGCCATGAAAGTGCAGATGGAGAGGTTGGCTGTGAAGAAGAAGGGCTTATTCAAATGGAAGAGGCTTGGAATGCCTACATTTGGTAGAAACGTGGGAGGGGTGGAGAGAATTGAAGAAGAGGAGGAGGAAGCTGAAAGAGAAAGTAGGTTTGGAAGGCAAACGTCAATGGACATGAAAACCAGTTTGGTGAAAAGTAGGACTCCCCACAAGTGGAGGAAATCTATGTCCTGA 1158 0.4827 MDYFVKTLSSIKQKGIRADLIGSIITHYASIWLPDLSASSENGVTTQFQSPESVTSSWMKKRFFVETLVNVLPPEKDSVPCNFLLRLLRTANMVRVDATYRAEIEDRISSQLDQASLKELMIPSFSHTCGTLLDVELVLRLVKRFMSMDRDGAALVKVAKLVDCYLAEAAVDANLSLSEFHALAGVLPNHARATDDGLYRAIDTYLKAHPGVLKQERKGLCRLLDSRKLTPEASLHTAQNERLPVRAVIQVLFSEQAKLNRQVDWSGSFSLRSPNDPPGRCLSKREMNAQQLEITKLKEDVYRLQNQLNAMKVQMERLAVKKKGLFKWKRLGMPTFGRNVGGVERIEEEEEEAERESRFGRQTSMDMKTSLVKSRTPHKWRKSMS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00124 385 ProSiteProfiles NPH3 domain profile. 1 258 IPR027356 -
Vian11g00124 385 MobiDBLite consensus disorder prediction 344 385 - -
Vian11g00124 385 Coils Coil 287 321 - -
Vian11g00124 385 Coils Coil 343 363 - -
Vian11g00124 385 PANTHER OS12G0117600 PROTEIN 2 354 IPR043454 -
Vian11g00124 385 Pfam NPH3 family 1 234 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00124 Vian-Chr11 1084022 1086039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00124 1 259 EF-hand Containing Proteins AT3G44820 34.247 7.14e-43 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00124 - - gmx:100777820 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian11g00124 11 1084022 1086039 Vian11g00124 11 1084022 1086039 ECH
Vian11g00124 11 1084022 1086039 Vian9g00126 9 961814 963601 PCT