Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian11g00117 ATGAGTCATGCACATTCTCATACAGGCTCTGGCAGCAGAATCACTCCTGAGTTTGGAAAGACATATGTTGTGAGACCCAAAGGAAAACACCAAGCCACTATAATTTGGTTGCATGGTCTTGGTGACAATGGTTTGAGCTCATCTCAGCTTTTGGAATCCCTTCCTCTTCCAAATATAAAATGGATTTGTCCAACTGCCCCCACCCGTCCTGTGGCAATACTTGGTGGTTTTCCCTGCACAGCATGGTTTGATGTGGGAGAACTTTCAGAAGATGGCCCAGATGATTGGGAGGGTTTGGATGCCTCAGCAATACACATTGCTAACTTGTTGTCAACAGAGCCAGCTGATGTGAAAGTTGCTGTTGGAGGCTTCAGCATGGGTGCAGCAATAGCCCTATACTCTGCAACTTGTTTTGCCATAGGAAGGTATGGAAATGGCATTCCCTACCCTGTCAATCTAAGAACAGTGGTTGGACTAAGTGGTTGGCTTCCAGGATCAAGGAGCTTAAGGAACAAGATAGAAGTATCACATGAAGCAAGAAGACGAGCAACTTCATTGCCCATTTTGTTGTGCCATGGAATCAGTGATGATGTGATCCTTTACAAATATGGTGAAAAATCAGCTCAATCATTATGCTCAGCAGGGTTTCGATATGTTGCATTCAAATCCTATGATGGGCTTGGTCATTACACAATTCCTAGAGAGATGGATGAAGTTTGCACTTGGCTTAGTTCAAAGTTGGGGCTTGAAGGATCCTCATAA 762 0.4423 MSHAHSHTGSGSRITPEFGKTYVVRPKGKHQATIIWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFPCTAWFDVGELSEDGPDDWEGLDASAIHIANLLSTEPADVKVAVGGFSMGAAIALYSATCFAIGRYGNGIPYPVNLRTVVGLSGWLPGSRSLRNKIEVSHEARRRATSLPILLCHGISDDVILYKYGEKSAQSLCSAGFRYVAFKSYDGLGHYTIPREMDEVCTWLSSKLGLEGSS 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian11g00117 253 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 252 - -
Vian11g00117 253 Gene3D alpha/beta hydrolase 13 248 IPR029058 -
Vian11g00117 253 SUPERFAMILY alpha/beta-Hydrolases 22 247 IPR029058 -
Vian11g00117 253 Pfam Phospholipase/Carboxylesterase 22 244 IPR003140 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian11g00117 Vian-Chr11 996927 999639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian11g00117 9 252 Acyl Lipid Metabolism Gene Families AT3G15650 76.423 2.79e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian11g00117 K06130 - gmx:100781212 491.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian9g00119 9 905459 908432 Vian11g00117 11 996927 999639 ECH
Vian4g00639 4 7696014 7703516 Vian11g00117 11 996927 999639 ECH
Vian11g00117 11 996927 999639 Vian11g00117 11 996927 999639 ECH
Vian11g00117 11 996927 999639 Vian9g00119 9 905459 908432 PCT