Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00677 ATGATTCCTGGCATTTTCTCAAGGCCGAATGCTACCATTTATTGTTGCATCCGGGAAGCATTGACTAGGCAACAAGGGATACCGGCATCCTTGTATAGAAGTTCAGGCTTGTCTCTTTGTTCACTGTATTCAACTTTCTTTTTGCCCGGTTCAACTCATTGCTCCTCAAGCCACACGCTTATCAAAAAATCAATGACTACTGCCTCCCATTGCAATGCTGTGCTGGGAGGTGTTTGTGTTAATGGTTTAATCTCAGGTTGTGGTAGTGTGCTAGACTTCACAAAGCCTGCTGTTGTGTACTTAAAAGACAAAACATTTAAAGGCTGCGTAAGGGGTAGCGGGAATCTAAGGAGACCACAACCTTCGTTTGGTTCTTTGAGTTTTGGTAGTTCTACTTTTGATGGTAATTGGAGGATCCGGGATTCCAGTTTGCTTCATGGATCATGGCTCAAGAGTTTCTCTACCTCTACTTCTGCTTGCCCATCAGCTGGGGTTGCTCGTGCTGTCTCTTTTGATGGCAGCCCTCCCGATGAACAGCTTGCAAATTCCTCTTTTTCACCTGACGAAACTACTGTTGGTGGCAAGACCTTGAAGATGTTGTCAGGATCATGTTATCTACCGCATCCGGATAAGGAGGAGACAGGAGGAGAGGATGCTCATTTTATTTGCGCAGATGAACATGCAATTGGTGTTGCTGATGGTGTAGGTGGCTGGGCTGACGTTGGTGTTAATTCAGGACTGTTTTCCCGGGAACTTATATCCAATTCAGTGAGAGCAATTCAAGAGGAGCCCCAAGGTTCTTTTAATCCAACAAGGGTGTTAGAGAAGGCTCATTCAAATACAAAGGCTAAGGGTTCATCAACAGCTTGTATTGTTGCCCTTACTGATAAGGGACTACATGCTATTAATTTGGGCGACAGTGGATTTATTGTGGTTAGAGATGGATGCACTATTTTCCAGTCCCCTGTTCAACAACATGACTTCAATTTCACATATCAGTTGGAGAGTGGCAATGGAGGCGATCTACCGAGCTCTGCGGAGGTTTTTACCATACCCGTTGCTTCTGGAGATGTAGTCATTGCTGGAACAGATGGCTTATTTGACAATCTGTACAATAGTGAGATCACTGCAGTTGTTGTACATGCAATTAGGGCTGGACTAGAGCCCCAAGTAACTGCTCAGAAGATAGCAGCACTGGCTCGTCAGCGAGCGCTGGACCCGAGCAGGCCGACACCATTTTCTACTGCTGCTCAGGAGGCGGGCTTCCGTTATTATGGTGGCAAACTTGATGACATAACTGTTGTTGTCTCATACATATCTGGCTCACTTACCGAGTGA 1338 0.4567 MIPGIFSRPNATIYCCIREALTRQQGIPASLYRSSGLSLCSLYSTFFLPGSTHCSSSHTLIKKSMTTASHCNAVLGGVCVNGLISGCGSVLDFTKPAVVYLKDKTFKGCVRGSGNLRRPQPSFGSLSFGSSTFDGNWRIRDSSLLHGSWLKSFSTSTSACPSAGVARAVSFDGSPPDEQLANSSFSPDETTVGGKTLKMLSGSCYLPHPDKEETGGEDAHFICADEHAIGVADGVGGWADVGVNSGLFSRELISNSVRAIQEEPQGSFNPTRVLEKAHSNTKAKGSSTACIVALTDKGLHAINLGDSGFIVVRDGCTIFQSPVQQHDFNFTYQLESGNGGDLPSSAEVFTIPVASGDVVIAGTDGLFDNLYNSEITAVVVHAIRAGLEPQVTAQKIAALARQRALDPSRPTPFSTAAQEAGFRYYGGKLDDITVVVSYISGSLTE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00677 445 ProSiteProfiles PPM-type phosphatase domain profile. 200 439 IPR001932 -
Vian10g00677 445 Pfam Stage II sporulation protein E (SpoIIE) 227 437 IPR001932 -
Vian10g00677 445 Gene3D - 342 444 IPR036457 -
Vian10g00677 445 SUPERFAMILY PP2C-like 203 437 IPR036457 -
Vian10g00677 445 SMART PP2C_4 190 437 IPR001932 -
Vian10g00677 445 MobiDBLite consensus disorder prediction 176 191 - -
Vian10g00677 445 Gene3D - 209 335 IPR036457 -
Vian10g00677 445 MobiDBLite consensus disorder prediction 171 192 - -
Vian10g00677 445 PANTHER PROTEIN PHOSPHATASE 2C 179 439 IPR039123 -
Vian10g00677 445 SMART PP2C_SIG_2 212 439 IPR001932 -
Vian10g00677 445 FunFam 5-azacytidine resistance protein azr1 208 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00677 Vian-Chr10 6524238 6526987 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00677 K17508 - gmx:100785804 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00677 10 6524238 6526987 Vian10g00677 10 6524238 6526987 ECH
Vian1g01755 1 20537172 20548227 Vian10g00677 10 6524238 6526987 ECH
Vian10g00677 10 6524238 6526987 Vian1g01755 1 20537172 20548227 PCT