Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00444 ATGCTTCGTCACCATTCATTAATCTTCGTGCGGATTTTGACATGTTCAGTTCGCAGTGTGCGTTATGTCTATGGCACCAACCATTCCCAATGCGAATGCGACGAGCCTTTGCTCCTACACTACTTATCCAATGGCTGCCACCATGAAGCGCGAAACCTCCTTCAAAATTCTTCTGGAGGTGACCTTCACGCACGTGTGGTTCGTTGGACCAAGCTACTCTCCAACTTCTCCCGCCACGGTTACGTGGCCGAAGCTCGCACACTGTACGACATAATGCCTCACAGAAACCTCTTCACTAGCAATGTCATGTTGACAGCTTGGGGGATTGATGATTATGACGGTAGGTTGCATAGAGGTCTTGTTAGGATGTACTCTGGGCTTGGTATTATGGATTCTGCTCGCAACGTGTTTGAAAGTAATTTGAAAGACTCTGATGATCAGTGTTTCAATTCCATGATAAATGGTTATGTTCGGGCCGGTCAGTTGGCTAGAGCTCAAGAGTTGTTTGACATGGTACCCACTAGGAACAAGGTTGCATCGACTTGCATGATTTCTGGCTATCTTAGCGCCGGCCGAGTACTGGAGGCTTGGAATTTGTTTAATGACATGCCTGATAGGGATTCCATTGCATGGGCTGAGATGATTTATGGGTATGTGCAGAATGAGCTCATTGCTGAAGCCTTCTGCTTATTTTCTGAGATGATGGATCGTGGTGTTCCTCCTATGAGTTCTACATATGCTGTTCTATTCGGAGCTATGGGTTCAGTTGCATATCTAGATCAAGGGCGGCAATTACATGTTATTACTCCCTATAACATGAGGAGCTGGGTGAATTTTACTAAGTTCTTGACCGGAGCCTCAACTGTGGGAGGCATTGCCATTCCAAGCATATTGAAGCATGCAGGGGTTATTGGTTGGGGAGCCTTTGCAATGGAACTTTCTTCCTACTTCGTGTTTGGACTGACTGTAATATGTTACCTTTGGATGGGTGATGAAGATGAATACAGTATCCTCTGA 1017 0.4582 MLRHHSLIFVRILTCSVRSVRYVYGTNHSQCECDEPLLLHYLSNGCHHEARNLLQNSSGGDLHARVVRWTKLLSNFSRHGYVAEARTLYDIMPHRNLFTSNVMLTAWGIDDYDGRLHRGLVRMYSGLGIMDSARNVFESNLKDSDDQCFNSMINGYVRAGQLARAQELFDMVPTRNKVASTCMISGYLSAGRVLEAWNLFNDMPDRDSIAWAEMIYGYVQNELIAEAFCLFSEMMDRGVPPMSSTYAVLFGAMGSVAYLDQGRQLHVITPYNMRSWVNFTKFLTGASTVGGIAIPSILKHAGVIGWGAFAMELSSYFVFGLTVICYLWMGDEDEYSIL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00444 338 NCBIfam pentatricopeptide repeat 181 207 IPR002885 -
Vian10g00444 338 NCBIfam pentatricopeptide repeat 210 241 IPR002885 -
Vian10g00444 338 NCBIfam pentatricopeptide repeat 148 171 IPR002885 -
Vian10g00444 338 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Vian10g00444 338 Pfam PPR repeat family 207 253 IPR002885 -
Vian10g00444 338 Gene3D Tetratricopeptide repeat domain 35 110 IPR011990 GO:0005515
Vian10g00444 338 Gene3D Tetratricopeptide repeat domain 111 174 IPR011990 GO:0005515
Vian10g00444 338 Gene3D Tetratricopeptide repeat domain 175 259 IPR011990 GO:0005515
Vian10g00444 338 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vian10g00444 338 Pfam Vacuolar protein sorting 55 272 333 IPR007262 -
Vian10g00444 338 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 156 267 IPR046960 GO:0003723|GO:0009451
Vian10g00444 338 Pfam PPR repeat 148 171 IPR002885 -
Vian10g00444 338 Pfam PPR repeat 181 206 IPR002885 -
Vian10g00444 338 Pfam PPR repeat 69 96 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00444 Vian-Chr10 4101785 4106960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00444 274 334 EF-hand Containing Proteins AT1G32410 60.656 1.26e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00444 - - gmx:102662400 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00444 10 4101785 4106960 Vian1g01504 1 16650869 16651594 PCT