Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00248 ATGAAAGAATCGGAGAAAGTAACGTGGGATCAGGGACGATGTCCGGCGCAGGCACGATCCTTAGGCTCACAGAAGCTTATGGTATGGCTAATGCTCTTCGTTTCGCTCATCTACATGCTTTATACTCTGAAGCTCGTCTCAACATCGTCAAGCGCCTGCAACCACGCGCCTTTCATCATCAACCATCTCGGTTCTTCCTCTTTCCCCTACGCAAACGTTACGGAGAAGAGGGAATCCTCCTCTTTGGGTACCGGAACGGGGAAGCGCCGAGACCAGAAGACGGAGCTCCGTCACGTGGTGTTCGGAATCGCGGCGTCGTCGAAGCTGTGGGAGCACAGAAAGAATTACATAAAGATTTGGTACAGGAAGAAGGAGATGAGGGGAGTGGTGTGGCTGGACGATCGCGTGAAGATCGACCCGGGGGAAGGGTTGCCGCCGGTGAAGGTTTCGACGGACACCTCTAATTTCGTCTACACCAACAAGCTGGGTCACCGCTCCGCCATTCGGATCTCCCGCATTGTCACCGAAACGCTGCGTCTGGGGCTCAAGGACGTGCGGTGGTTCGTCATGGGCGATGACGACACTGTTTTCGTGACGGACAACCTGCTGAAGATTCTGAACAAGTACGACCACAACCACATGTACTACATTGGGAGCTTGTCGGAGAGTCACTTGCAGAACATATTCTTCTCCTACGGCATGGCCTACGGCGGAGGGGGCTTCGCCATCAGCTACCCCTTGGCTAAAGCTCTGAGCAAAACTCAAGACCGTTGTATTCAGAGGTACCCTTCTCTGTATGGCTCCGATGATCGAATGCAAGCTTGCATGGCTGAACTCGGTGTTCCACTCACCAAGGAACTCGGTTTTCACCAGTATGATGTGTATGGGAACCTGTTGGGGCTTCTTGCAGCTCATCCAGTGACTCCATTGGTGTCACTGCACCACCTTGATGTGGTTGAGCCAATATTCCCGAACGTTACAAGAATAGAAGCCCTTCAACGGCTTACCATTCCAATGAAGCTTGACTCAGCGTCCCTCGTTCAGCAGTCAATTTGCTACGACAAGAAAAGAAAATGGACCATTTCGGTTTCATGGGGTTTTGCTGTTCAAATATTTCGTGGGATATTCACACAGAGGGAGATGGAAATGCCTTCCAGAACATTCCTGAATTGGTATAGAAGAGCAGATTACACTGCATATGCATTCAACACACGCCCGGTTAGCAGAAACCCTTGTCAGAAGCCTTTCGTGTTTTACTTCTCAAAGGCAAAACTGAATTCCACATTGAAACACACAGTGACTGAATATGAAAGACATCTTGTTCCTCACCCAGAATGTCACTGGCAGATGCCTGATCCTTCTCATCTTCAAAAATTAGAGGTGCACAAGAAGCCAGACCCGCATCTATGGGATAGAGTATGCCCCAAGGAGAAATTGTTGCAGAGTGATGAAGACCAACAAGACAGGAATCCTGAAGATAGATATGAAATAGCTCAGAGGGCAGCACGTAACTTTTCTGCTTTGCTAGATAATCCTTAG 1539 0.4958 MKESEKVTWDQGRCPAQARSLGSQKLMVWLMLFVSLIYMLYTLKLVSTSSSACNHAPFIINHLGSSSFPYANVTEKRESSSLGTGTGKRRDQKTELRHVVFGIAASSKLWEHRKNYIKIWYRKKEMRGVVWLDDRVKIDPGEGLPPVKVSTDTSNFVYTNKLGHRSAIRISRIVTETLRLGLKDVRWFVMGDDDTVFVTDNLLKILNKYDHNHMYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAKALSKTQDRCIQRYPSLYGSDDRMQACMAELGVPLTKELGFHQYDVYGNLLGLLAAHPVTPLVSLHHLDVVEPIFPNVTRIEALQRLTIPMKLDSASLVQQSICYDKKRKWTISVSWGFAVQIFRGIFTQREMEMPSRTFLNWYRRADYTAYAFNTRPVSRNPCQKPFVFYFSKAKLNSTLKHTVTEYERHLVPHPECHWQMPDPSHLQKLEVHKKPDPHLWDRVCPKEKLLQSDEDQQDRNPEDRYEIAQRAARNFSALLDNP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00248 512 Gene3D - 86 345 - -
Vian10g00248 512 Pfam Protein of unknown function, DUF604 226 474 IPR006740 -
Vian10g00248 512 PANTHER FRINGE-RELATED 25 471 - -
Vian10g00248 512 FunFam Fringe-related protein-like 86 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00248 Vian-Chr10 2145474 2149320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00248 4 472 Glycosyltransferase AT5G41460 66.460 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00248 - - gmx:100801504 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00248 10 2145474 2149320 Vian10g00248 10 2145474 2149320 ECH
Vian10g00248 10 2145474 2149320 Vian1g03854 1 61609047 61612278 PCT