Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00203 ATGGCACAGAAGAGCTTCATCGTTGAGGTCGAGAAAGCGAAGGAGGCGAGCGAAGGAAGGCCATCGAGAGGACCTGTGTACCGTAGCCTCTTCGCCAAGAATGGATTCCCTGCTCCTATCGAAGGTCTCGATTGCTGCTGGGACGTTTTCCGATTGTCCGTTGAGAAATATCCAACTAGTCCAATGTTTGGTCGCCGGGAAATTGTGAATGGGAAGGCAGGCAAGTACAAGTGGTTAACATACAAAGAAGTATATGACCAGGTGATTAAGGTTGGGAATTCCATCCGCAGCTGTGGTTATGGAGAAGGTATAAAATGCGGTATTTATGGTGCCAATTCAGCAGAATGGATTATGAGCATGGAGGCCTGCAATGCTCATGGACTCTATTGTGTACCTTTATATGATACCTTGGGTGCTGGAGCTGTAGAATTTATTATATGCCACGCAGAGGTCTCAATTGCATTTGTGGAAGAAAAGAAGATACCCGAGCTATTGAAGACATTTCCAAATGCAACAAAGTATCTCAAGACAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAGAAGTTTGGGTTGGCAATTTATTCGTGGGATGAATTTTTGCAAGTGGATCAAGGTCAGAGTTATGATCTTCCAATTAAGAAAAGGAGTGACATCTGTACAATAATGTATACTAGTGGAACTACTGGTGACCCCAAGGGAGTGTTGATATCAAATGAGAGTATTATCACTCTCTTAGCCGGGGTAAAGCGACTGTTGGAGAGTGTCAATGAACAATTAACTGAGAAGGATGTATACATATCATACCTTCCTCTTGCACATATCTTTGATAGGGTCATTGAGGAAACATTCATATGGCATGGTGCTTCAATTGGTTTCTGGCGTGGGGATGTCAAATTGCTAATTGAAGATATTGGGGAACTAAAACCAACTATTTTTTGTGCTGTTCCCCGTGTGCTCGATAGAGTGTACTCAGGTATGACACAGAAGATTGCTTCTGGGGGCTTCTTGAAGAGGACATTATTCAACTGTGCTTATTCATATAAGCTGAATAACATGAAGAAAGGGTTTACCCATGGAGAGGCATCCCCTATTTGTGATAAAATTGTATTTGATAAGGTAAAGCAGGGTTTAGGAAGTAGAGTTCGTCTTATTTTGTCTGGAGCAGCACCTTTATCTGCACATGTGGAAGGTTACTTACGGGTGGTGACTTGTTGTCATGTCCTACAAGGATATGGCCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATGGAAATGCTTGGAACGGTGGGCCCTCCAGTACCAAATGTTGATGTGTGCTTGGAATCTGTTCCTGAAATGGGATATGATGCCCTAGCAAGCACACCAAGGGGAGAAATTTGTGTAAAGGGTAAAACCTTGTTTTCCGGGTACTACAAACGTGAAGATCTCACCAAAGAGGTTCTGATCGATGAATGGTTCCATACAGGGGATATTGGAGAGTGGCAACCTAATGGAAGCATGAAAATTATTGATAGGAAGAAAAATATATTTAAACTTTCACAGGGAGAATATGTTGCTGTCGAAAACCTGGAGAACATTTATGGTCAAGTTTCATGTATTGAATCTATATGGGTTTACGGAAACAGTTTTGAGGCCTTCCTTGTTGCTGTTGTTAATCCCAGAAAGGAAGCACTTGAACAATGGGCTCAAGAAAATGCTATATCAAAGGACTTCAATTCTCTTTGTGAAGATGCTAGAGCAAAAAGTTACATACTTGCAGAGCTCTCAAAGATTGGAAAGGAAAAGAAGTTGAAAGGTTTCGAGTTTATAAAAGGAGTTCATCTTGACCCGATTCCATTTGACATGGAACGTGACCTTATCACTCCAACATACAAGAAGAAGAGGCCACAGTTGCTTAAATTTTATCAGAATGCTATTGACAACATGTACAAGAGTACAAAGTAA 1977 0.4153 MAQKSFIVEVEKAKEASEGRPSRGPVYRSLFAKNGFPAPIEGLDCCWDVFRLSVEKYPTSPMFGRREIVNGKAGKYKWLTYKEVYDQVIKVGNSIRSCGYGEGIKCGIYGANSAEWIMSMEACNAHGLYCVPLYDTLGAGAVEFIICHAEVSIAFVEEKKIPELLKTFPNATKYLKTIVSFGKVTPEQKQEVEKFGLAIYSWDEFLQVDQGQSYDLPIKKRSDICTIMYTSGTTGDPKGVLISNESIITLLAGVKRLLESVNEQLTEKDVYISYLPLAHIFDRVIEETFIWHGASIGFWRGDVKLLIEDIGELKPTIFCAVPRVLDRVYSGMTQKIASGGFLKRTLFNCAYSYKLNNMKKGFTHGEASPICDKIVFDKVKQGLGSRVRLILSGAAPLSAHVEGYLRVVTCCHVLQGYGLTETCAGTFVSLPNEMEMLGTVGPPVPNVDVCLESVPEMGYDALASTPRGEICVKGKTLFSGYYKREDLTKEVLIDEWFHTGDIGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENLENIYGQVSCIESIWVYGNSFEAFLVAVVNPRKEALEQWAQENAISKDFNSLCEDARAKSYILAELSKIGKEKKLKGFEFIKGVHLDPIPFDMERDLITPTYKKKRPQLLKFYQNAIDNMYKSTK 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00203 658 CDD LC-FACS_euk 74 655 IPR045311 GO:0004467|GO:0006631
Vian10g00203 658 ProSitePatterns Putative AMP-binding domain signature. 227 238 IPR020845 -
Vian10g00203 658 SUPERFAMILY Acetyl-CoA synthetase-like 43 655 - -
Vian10g00203 658 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 654 - -
Vian10g00203 658 Pfam AMP-binding enzyme 69 524 IPR000873 -
Vian10g00203 658 Gene3D - 43 516 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00203 Vian-Chr10 1785168 1796646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00203 3 656 Acyl Lipid Metabolism Gene Families AT4G23850 74.924 0.0 1060
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00203 K01897 - gmx:100814965 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian10g00203 10 1785168 1796646 Vian10g00203 10 1785168 1796646 ECH
Vian10g00203 10 1785168 1796646 Vian1g03905 1 62169537 62175667 PCT