Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian10g00128 ATGTCATCAAAAGTGTTTAGAGCAAGCCGATCATCTATATCAACATCATCTGATGCAGCTGATGGCCAGAAGCCTCCTTTACCTCCAAGTGTACAATTTGGGCGGAGAACTTCCTCGGGTCGCTATGTGAGTTACTCTAGAGATGATCTTGACAGTGAAATAGGGAGCACAGACTTCATGAATTATACAGTGCATATACCAGCCACCCCAGATAACCAACCTATGGATCCATCAATCTCACAGAAAGTTGAGGAGCAATATGTGTCAAATTCACTTTTCACAGGTGGATTCAACAGCGTTACTCGAGCCCATCTGATGGATAAGGTGATAGAATCTGAAGCAAATCATCCACAGATGGCTGGTGCAAAAGGGTCTTCATGTGCAGTTCCTGGTTGTGATTCTAAGGTGATGAGTGACGAACGTGGTGCTGATATTCTTCCCTGTGAGTGTGATTTTAAGATATGTAGAGATTGTTATATAGATGCAGTGAAAACAGGAGGTGGTATTTGCCCAGGATGCAAGGAACAGTATAAGAACACAGAATTAGATGAAGTGGCTGTAGATAATGGACGTCCTCTTCCACTTCCTCCACCTGGTGGAATTTCTAAAATGGAGAAGAGATTGTCCTTGATGAAGTCAACGAAATCAATGCTAATGAGGAGCCAAACTGGAGACTTTGATCATAACCGGTGGCTCTTTGAAACAAAGGGGACCTATGGCTATGGTAATGCTATATGGCCAAAGGAAGGAGGTTTTGGAAATGAAATAGAGGATGATGTTGTTGAGCCAACTGAATTGATGAACAGGCCTTGGAGACCACTTACTAGGAAACTGAAGATACCTGCTGCTATTTTGAGTCCATATCGTCTTATCATTTTTATTCGTTTGGTTGTCTTGGCACTGTTCTTGGCATGGAGGGTCAAACACCAAAATACTGATGCAGTATGGCTATGGGGCATGTCTGTTGTTTGTGAGATATGGTTTGCTTTTTCCTGGCTTCTGGATCAACTGCCCAAACTATGCCCAGTGAATCGCTCCACAGATCTTAATGTTCTAAAGGAGAAATTTGAAACACCCACCCCTAACAATCCAACTGGAAAATCTGATCTTCCAGGAATAGATATATTTGTTTCTACTGCAGATCCTGAGAAAGAACCTCCTCTCGTAACTGCAAACACTATCCTGTCTATTTTAGCTGCTGATTACCCTGTGGAGAAGCTTTCTTGTTATGTTTCTGATGATGGAGGTGCGCTCCTAACTTTTGAGGCAATGGCTGAAGCTGCTAGCTTTGCTAATTCATGGGTTCCCTTCTGCCGTAAACATGATATAGAGCCTAGGAATCCTGAATCATACTTCAACTTGAAAAGAGACCCTTACAAAAACAAAGTGCGGCCTGATTTTGTCAAGGATCGAAGGCGAGTAAAGCGTGAGTATGATGAATTTAAGGTTAGGATCAATGGTCTGCCGGAATCTATTCGTCGCCGATCTGATGCCTATCATGCAAGAGAGGAAATCAAGGCCATGAAAGTTCAGAGACAAAATAGGGGAGATGAACCTCAAGAAACGGTAAAGATTCCTAAAGCAACATGGATGGCTGATGGAACACATTGGCCAGGAACTTGGTTGAGTCCTACATCCGAGCATTCTAAGGGTGACCATGCTGGTATAATTCAGGTGATGTTGAAGCCGCCTAGCGATGAACCTCTCCCCGGAAATGCAGATGATACAAGTCTCATAGACCTAACTGATGTTGATATACGTCTTCCCCTTCTTGTTTATGTTTCTCGAGAGAAGCGACCGGGCTATGATCACAACAAGAAAGCTGGCGCCATGAATGCCTTGGTTCGAGCATCGGCAATCATGTCTAATGGTCCATTTATTCTCAATCTTGACTGTGATCACTATATCTACAACTCAAAGGCAATGAGGGAAGGGATGTGCTTTATGATGGATCGCGGAGGCGATCGCCTTTGCTACGTCCAGTTCCCCCAAAGGTTTGAAGGGATTGATCCCTCTGATAGATATGCTAATCACAATACTGTCTTCTTTGATGTCAACATGAGAGCCCTTGATGGACTTCAAGGGCCGGTGTATGTGGGAACAGGGTGCCTTTTCAGACGGATTGCACTATATGGTTTTGACCCACCCCGTTCCAAAGAGCACCACACAGGTTGTTGTAATTGTTGCTTTGGTCGTCAGAAGAAACATGCATCAATGGCAAGCACCCCAGAAGAGAGCCGGGCATTGAGGATGGGTGATTCTGATGAGGAGGAAATGAATCTATCACTGTTCCCGAAGAAATTTGGAAACTCAACTTTCCTTATTGACTCTATTCCTGTGGCTGAATTCCAAGGCCGACCACTGGCCGATCACCCTGCCGTGAAAAACGGACGTCCACCCGGCGCTCTCACCATCCCCCGCGATCTTCTCGATGCATCGACAGTGGCAGAGGCCATCAGTGTCATCTCCTGTTGGTACGAGGACAAGACCGAGTGGGGAAACCGTGTCGGGTGGATCTATGGCTCTGTGACAGAGGATGTGGTGACAGGGTATAGGATGCACAATAGAGGATGGAAATCAGTTTACTGTGTGACCAAACGTGATGCCTTCCGTGGAACTGCTCCCATCAATCTCACTGACAGGTTGCATCAAGTTCTCAGATGGGCTACTGGCTCAGTTGAGATATTCTTCTCAAGAAACAATGCTTTGCTGGCCAGCCCAAGAATGAAAATTCTTCAAAGAATTGCATATCTGAATGTTGGAATCTACCCTTTCACATCCATATTTCTGATTGTCTACTGCTTCCTTCCTGCATTGTCCCTTTTCTCTGGGCAGTTCATCGTGCAGACCCTCAATGTCACTTTTCTATCATACCTCTTAGGAATCACCGTGACTCTGTGCATACTTGCAGTGCTTGAGATTAAGTGGTCAGGGATTGAGCTGGAAGAATGGTGGAGAAATGAGCAGTTCTGGCTGATTGGAGGGACAAGTGCTCATCTTGCTGCTGTGCTGCAAGGATTGCTGAAAGTCATAGCAGGAATTGAAATCTCATTCACCTTGACATCAAAGTCAGGTGGCGATGATGTAGATGATGAATTTGCTGATCTGTATGTTGTGAAATGGACATCCCTCATGATACCACCTATCACAATTATGATGGTTAACCTGATAGGAATAGCAGTTGGAGTTAGCAGAACCATTTACAGTGTGATACCACAATGGAGCCGTCTACTGGGTGGTGTGTTCTTCAGTTTTTGGGTCTTGGCTCATCTCTATCCCTTTGCAAAAGGTTTGATGGGAAGAAGAGGAAGAACACCTACCATAGTTTTTGTATGGTCAGGCCTAATTTCCATCACAATTTCTCTCCTCTGGGTTGCCATCAACCCTCCTGCTGGTTCTAATCAGATTGGTGGTTCATTCCAGTTTCCTTGA 3432 0.4481 MSSKVFRASRSSISTSSDAADGQKPPLPPSVQFGRRTSSGRYVSYSRDDLDSEIGSTDFMNYTVHIPATPDNQPMDPSISQKVEEQYVSNSLFTGGFNSVTRAHLMDKVIESEANHPQMAGAKGSSCAVPGCDSKVMSDERGADILPCECDFKICRDCYIDAVKTGGGICPGCKEQYKNTELDEVAVDNGRPLPLPPPGGISKMEKRLSLMKSTKSMLMRSQTGDFDHNRWLFETKGTYGYGNAIWPKEGGFGNEIEDDVVEPTELMNRPWRPLTRKLKIPAAILSPYRLIIFIRLVVLALFLAWRVKHQNTDAVWLWGMSVVCEIWFAFSWLLDQLPKLCPVNRSTDLNVLKEKFETPTPNNPTGKSDLPGIDIFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANSWVPFCRKHDIEPRNPESYFNLKRDPYKNKVRPDFVKDRRRVKREYDEFKVRINGLPESIRRRSDAYHAREEIKAMKVQRQNRGDEPQETVKIPKATWMADGTHWPGTWLSPTSEHSKGDHAGIIQVMLKPPSDEPLPGNADDTSLIDLTDVDIRLPLLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSKAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRSKEHHTGCCNCCFGRQKKHASMASTPEESRALRMGDSDEEEMNLSLFPKKFGNSTFLIDSIPVAEFQGRPLADHPAVKNGRPPGALTIPRDLLDASTVAEAISVISCWYEDKTEWGNRVGWIYGSVTEDVVTGYRMHNRGWKSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASPRMKILQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLSYLLGITVTLCILAVLEIKWSGIELEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSGGDDVDDEFADLYVVKWTSLMIPPITIMMVNLIGIAVGVSRTIYSVIPQWSRLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAINPPAGSNQIGGSFQFP 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian10g00128 1143 MobiDBLite consensus disorder prediction 1 21 - -
Vian10g00128 1143 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 272 1113 - -
Vian10g00128 1143 FunFam cellulose synthase-like protein D3 578 715 - -
Vian10g00128 1143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 191 IPR013083 -
Vian10g00128 1143 SUPERFAMILY RING/U-box 112 181 - -
Vian10g00128 1143 Pfam Cellulose synthase 373 1133 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vian10g00128 1143 FunFam Cellulose synthase-like protein D3 110 192 - -
Vian10g00128 1143 Pfam RING/Ubox like zinc-binding domain 129 178 - -
Vian10g00128 1143 MobiDBLite consensus disorder prediction 1 44 - -
Vian10g00128 1143 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 583 714 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian10g00128 Vian-Chr10 1085123 1088752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian10g00128 2 1143 Glycosyltransferase AT3G03050 84.160 0.0 2026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian10g00128 K20924 - gmx:100792604 2263.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian5g01729 5 39651782 39656666 Vian10g00128 10 1085123 1088752 ECH
Vian10g00128 10 1085123 1088752 Vian10g00128 10 1085123 1088752 ECH