Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04308 ATGGGTGATAGATTAAAAGcaagaaaaagcaaaaacagTTTTTTCCCATTTACCAGAAACAGTACTGATAGTGCTTGCTTTGATCACCATAAGTTTCTTAGTTCAAAACATACTATGGAAAAAGAACTTGCATGCAGTCGTTGCAAACGAAAGTTTGTAGTACCAACAAAAATAACTACATATCGTTGCTGTGAGTGCCAAGGTGTTAGCAAATCGATTTCAGGTTATAAGCAATTAAGAGAAAATAGTTTAGGAGCCAAATTTTTCGACCAAGATCAACAACATAATGCAGCCAGTTATTCATCATCCTTGTTGTCCACAGCTATGACTGGTAACAAGCGCGCAGTTCTCTGTGGAGTTAGTTACAGCAGAAGACGGTATAGGCTCAAGGGAACCGTTAATGATGTTGTTAACATGAACTCTCTACTGGTTGATAATTTTGCATTCCCAATTCAATCCATACGTGTCCTCACAGAAGAACAGAAGGATCCAAATTTGATTCCAACAAGGAGGAATATAGTGGAATCTTTAAAGTGGCTGGTGAAGGACTGCCAATTAGGAGACTCGTTGGTATTCTACTTCTCCGGACATGGTATGCAACAACCGGCAGATgacaaagaagatgaaattgaTGGACTTGATGAAACTATTTGCCCTGTTGATTTTATTCGAGAAGGAATGATCACTGACAATGAAATCAATTCTACCATTGTTGAGCCACTCAAGAATGGTGTTAAACTTCATGCTATTATTGATGCTTGTCATAGTGGAACAAGTCTTGATCTCATGCATGTTTATAAAAAGGACAATGGCAGTTGGAAATGGATGAATAATAATCCCCCCGGCACAGAACCTGTTACTAAACGTACAAATGGTGGAACAGCCATTTGCTTCAGTGCTTGTGAAGATAGTCAGTTGGCTGCTGATACTGCAGCTTTTGGAGGAAAAGAGATGAACGGTGTTATGACCTATCTTTTAGCAAAAATAATCAGAGAACATTCTGGAATTACATATGCCAGTTTGCTAGAAAAATTGCACGAGGATATTGCGAAGATTCAACGAAACAAACACTTCAGTGGGTTCTTGAAACGTATTTTTCACCGTACAATTGACCAGGACCCTCTTTTATCATCATCGAAGAAATTCGACGTTAATACGTTAGCATTTAGGCACATGAAAATTGGCATGAAAAACACCAAGTTGAATATTGTTTTTCAGCACAACCAGGATAATACTACTGCTAAGTACACCAGCACAAAACAAGAGCTGGTTAGCGAGGAATTGCAGTCTTTTACATATGCTAATCCTGTATTAAAGGACGGTGGTGATGGCAAACACAATGAAAAAACATTGATTAATAACCTTCCTAGTAACCTTTCAGGAAATGGGAATGGATCAGTTTTCATCAGCGTCTACAACTACAATCTCAGCATGCATTATCCTCCTACTACCTATGGAACACCTGTCCTTTCCTATTATCCTCCATTGAGGCCTCCTTCTGCATTTGGTAACAAGAGGGCTGTGTTATTTGGAATCAGTTATGCTGACACGGCGGCTCCGAGGAAGCTTAAAGGTTCTGTGAACAAGGCTAAACTCATGAAACAATTTTTGATTGACAAGTTGGGATTTCCTAGCAATTCCATATACATGCTCACAGATGATTCAGAGGAGAAAAACACAATCCCAACAAAAAGTAACATGCGAACCGCCATGAGGTGGTTAGTTGAGGGCAGCAAACCAGGGGACTCGTTGGTATTTTACTTCTGTGGACATGGATCACGGGTTAAAGACCGTAACATGGATGAGGTTGATGGGTACGACGAAGCAATATGTCCTGTTGATTATGAACACGAGGGTATGATACTCGATGACGAAATCAGTGCCACAATTGTTAGGCCTCTACCTCATGGTGCCAAACTCCATGCCTTCGTTGATGCATCCTTTAGTGGGACAGTTCTTGACTTACCATTTTTGTGCAAGATGAACCGGATTGGTTCTTTTGGTTGGAAAGATCATAGACAACGGAGAGCCGGTTACAAAGGCACAAGTGGAGGGCTAGCAGTTTGTATTTCAGCTTGTGATGACAAAGATGGAAAAGCAGCAAGCAAATCGGCCTTGACTTACAGTTTCCTCCAAGTCATGCAAGATGTACCTAAATTGACATATGGTCGCTTGCTCAATGCTATGCTATTTACAATCCAATGGGCTAAAGCTGGAAAGATTGAACTAAAAGGCCAAGATCTTGCAAGGATCACTCGGCAACAATATGCTCAAGAGCCGCAACTGTCGTCTTCTgagaaatttgatatttctaCCAAGTTGTTTATAATCTGA 2334 0.3963 MGDRLKARKSKNSFFPFTRNSTDSACFDHHKFLSSKHTMEKELACSRCKRKFVVPTKITTYRCCECQGVSKSISGYKQLRENSLGAKFFDQDQQHNAASYSSSLLSTAMTGNKRAVLCGVSYSRRRYRLKGTVNDVVNMNSLLVDNFAFPIQSIRVLTEEQKDPNLIPTRRNIVESLKWLVKDCQLGDSLVFYFSGHGMQQPADDKEDEIDGLDETICPVDFIREGMITDNEINSTIVEPLKNGVKLHAIIDACHSGTSLDLMHVYKKDNGSWKWMNNNPPGTEPVTKRTNGGTAICFSACEDSQLAADTAAFGGKEMNGVMTYLLAKIIREHSGITYASLLEKLHEDIAKIQRNKHFSGFLKRIFHRTIDQDPLLSSSKKFDVNTLAFRHMKIGMKNTKLNIVFQHNQDNTTAKYTSTKQELVSEELQSFTYANPVLKDGGDGKHNEKTLINNLPSNLSGNGNGSVFISVYNYNLSMHYPPTTYGTPVLSYYPPLRPPSAFGNKRAVLFGISYADTAAPRKLKGSVNKAKLMKQFLIDKLGFPSNSIYMLTDDSEEKNTIPTKSNMRTAMRWLVEGSKPGDSLVFYFCGHGSRVKDRNMDEVDGYDEAICPVDYEHEGMILDDEISATIVRPLPHGAKLHAFVDASFSGTVLDLPFLCKMNRIGSFGWKDHRQRRAGYKGTSGGLAVCISACDDKDGKAASKSALTYSFLQVMQDVPKLTYGRLLNAMLFTIQWAKAGKIELKGQDLARITRQQYAQEPQLSSSEKFDISTKLFII 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04308 777 PANTHER METACASPASE-4 409 776 - -
Tsu08g04308 777 PANTHER METACASPASE-4 100 388 - -
Tsu08g04308 777 SUPERFAMILY Caspase-like 504 616 IPR029030 -
Tsu08g04308 777 SUPERFAMILY Caspase-like 117 358 IPR029030 -
Tsu08g04308 777 Gene3D - 483 777 - -
Tsu08g04308 777 Gene3D - 56 401 - -
Tsu08g04308 777 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 100 388 - -
Tsu08g04308 777 PANTHER ICE-LIKE PROTEASE (CASPASE) P20 DOMAIN PROTEIN 409 776 - -
Tsu08g04308 777 Pfam Caspase domain 505 767 - -
Tsu08g04308 777 Pfam Caspase domain 113 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04308 Tsu-Chr8 61036088 61041166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04308 K22684 - gmx:100795758 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01598 02 14027075 14029187 Tsu08g04308 08 61036088 61041166 PCT