Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g04238 atggtttTACAATATATTCTTATTGGAATTATACTTATAGTTTATTatagtttgttttttgtgtttgttgtaTATGGTTCTGCATCAAAGATAAAGACTGAAGATTTAGAAATTAATGATTGTGTTAATATTAGTAGTGCAacagaaaatgaaaaactatttcCTCAAGAATCCTCTGAAAGTATAGACATAATCATTGTAGGAGCTGGTGTTGCTGGTTCAGCCCTTGCTTACACACTTGGAAAGgaTGGAAGAACAGTGCATGTTATTGAGAGAGATTTGAGTGAACCTGACAGAATTGTGGGTGAATTGCTACAACCTGGAGGTTATTTGAGATTAATTGAATTGGGTCTTGAAGATTGTGTAGAAGAAATTGACGCTCAAAGAGTCTTTGGCTATGCTCTTTATAAAGATGGAAAAAATACCAAACTTTCTTATCCcttgaaaaaatataaggttGATGTTTCTGGAAGAAGCTTTCACAATGGTCGTTTCATACAAAGAATGCGCGAGAAGGCTTCATCTCTTTCAAATGTAAGATTAGAACAAGGTACTGTCACATCTTTAATAGAAGAGAAAGGAACCATCAAAGGGGTATATTACAAAACCAAAAGTGGATTAGAGATCAAAGCAAATGCTCCACTTACCATAGTATGTGATGGTTGTTTTTCCAACTTAAGACGTTCTCTTTGCAACACAAAGgtTGATGTGCCATCTCATTTTGTTGGTTTCATATTAGAGAATTGTGATCTTCCATATGCAAACCATGGACATGTTATCTTAGGTGATCCTTCTTCCATTTTGTTTTATCCAATCAGTAGCACTGAGATTCGATGTTTAGTTGATGTACCAGCCAAAATCTTACCTTCTATTGGTAATGGTGACATGGCACATTACCTCAAAACAGTGGTAACACCCCAgATTCCACCGGAGCTACGATGTTCTTTTGTAGAAGCAATTGATAAAGGAAACATAAGAAGCATGCCAAATAAAAGCATGACAACATGTCCTTATCCTAAACCAGGTGCTCTTCTAATAGGAGATGCTTTCAATATGCGACACCCTTTAACTGGAGGAGGAATGACAGTGGCTTTGTCTGATATTGTTTTGCTAAGGGATCTTCTTAGACCTCTACATGATTTACATCATGCATGCAAATATCTTGAATCATTTTACATTTTGCGCAAGCCACTAGCATCTACAATAAACACATTAGCCGGAGCATTGTATAAGGTGTTTTGTGCATCCGGTGACCCTGCTAGTAAAGAAATGAGGCAAGcatgttttgattatttgagCCTTGGAGGAGTTTTCTCAAATGGACCAATAGCTCTACTCTCTGGCCTTAATCCTTGTCCGTTAATATTGCTTCTCCATTTCATTGGCGTAGCTATATATGGGATTGCTCGCTTACTCTTACCATTTCCTTCTCCAAGACGCATTTGGATTGGAGTTAGGTTGATTTTGGGTGCATTAGGTATCATTTTTCCAATTATCAAGGCTGAAGGAGTTAGACAAATGTTCTTTTCATTCACTATGCCAGCATACTACAAAACACCTCATGCAAAGTTTTCATAA 1578 0.3517 MVLQYILIGIILIVYYSLFFVFVVYGSASKIKTEDLEINDCVNISSATENEKLFPQESSESIDIIIVGAGVAGSALAYTLGKDGRTVHVIERDLSEPDRIVGELLQPGGYLRLIELGLEDCVEEIDAQRVFGYALYKDGKNTKLSYPLKKYKVDVSGRSFHNGRFIQRMREKASSLSNVRLEQGTVTSLIEEKGTIKGVYYKTKSGLEIKANAPLTIVCDGCFSNLRRSLCNTKVDVPSHFVGFILENCDLPYANHGHVILGDPSSILFYPISSTEIRCLVDVPAKILPSIGNGDMAHYLKTVVTPQIPPELRCSFVEAIDKGNIRSMPNKSMTTCPYPKPGALLIGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLHDLHHACKYLESFYILRKPLASTINTLAGALYKVFCASGDPASKEMRQACFDYLSLGGVFSNGPIALLSGLNPCPLILLLHFIGVAIYGIARLLLPFPSPRRIWIGVRLILGALGIIFPIIKAEGVRQMFFSFTMPAYYKTPHAKFS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g04238 525 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 523 - -
Tsu08g04238 525 Pfam Squalene epoxidase 213 482 IPR013698 GO:0004506|GO:0016021|GO:0050660
Tsu08g04238 525 SUPERFAMILY FAD/NAD(P)-binding domain 62 435 IPR036188 -
Tsu08g04238 525 PANTHER SQUALENE MONOOXYGENASE 1 523 IPR040125 GO:0004506|GO:0016126
Tsu08g04238 525 Gene3D - 56 429 IPR036188 -
Tsu08g04238 525 Pfam NAD(P)-binding Rossmann-like domain 66 92 - -
Tsu08g04238 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 340 355 - -
Tsu08g04238 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 355 371 - -
Tsu08g04238 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 212 227 - -
Tsu08g04238 525 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g04238 Tsu-Chr8 60420985 60424541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g04238 25 517 Miscellaneous Gene Families AT1G58440 70.565 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g04238 K00511 - gmx:100796946 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01718 02 15107128 15110404 Tsu08g04238 08 60420985 60424541 PCT