Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01718 ATGGATTATCAGTATATTCTAGGAGGAATTTTTCTTGCTTCTAGTTTGgcatttgtgtttgttttgtatAGTTTTGGAGTAAAGAAGAAGGTAACAAAAAGTGGTTTAAGTTCAAAAGATGTAAAAAGTAATAATGGATATGCAAAGTTATCATCAGAAAATGGAATATGTTTACAAGAAGTTGAAGGAGAAACAGATATTGTTATTGTAGGTGCTGGTGTTGCTGGTGCTGCTCTTGCTTATACTCTTGGAAagGATGGACGGCGAGTACATGTGATTGAAAGAGACTTAAGTGAACCTGATAGGATTGTTGGTGAATTGCTACAACCTGGTGGCTATCTAAAATTACTTGAGTTGGGTCTTGAGGATTGTGTGGATGAAATTGATGCTCAAAGAGTCTTTGGTTATGCACTTTACAAGGATGGTAAAAATACCAAGCTATCTTACCCCTTGGAAAATTTTAACGCTGATGTATCAGGAAGAAGCTTTCACAATGGACGTTTCATACAAAGAATGCGAGAAAAGGCTTCATCTCTTccaaaTGTAAAATTAGAGCAAGGCACAGTTACATCATTACTTGAAGAAAATGGAACCATCAAAGGAGTGAACTACAAAACCAAAAGTGGAGAAGTGTTCGCAACAAAGGCTCCTCTCACCATAGTATGTGATGGTTGTTTTTCCAACTTGCGACGTTCTCTTTGCGATCCTAAGGTTGAAGTTCCCTCTCATTTTGTTGGATTGGTGTTGGAGAATTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTGGGAGATCCTTCACCCATTTTGTTTTACCCTATAAGTAGTACCGAGATTCGTTGTTTGGTTGACGTGCCTGCTGGCCAAAAACTACCTTCCCTTGGTAACGGTGACATGGCACATTATTTGAAAACCGTGGTAGCCCCTCAGGTTCCTCCAGAGTTGTATGATTCTTTTATAGCAGCAATTGATAAAGGAAACATAAGAAGCATGCCAAACAAAAGCATGCCTGCCTCACCTTATCCCACACCCGGAGCGCTTCTGATGGGAGACGCCTTCAATATGCGTCACCCTTTAACAGGAGGGGGGATGACTGTGGCTTTGTCCGACATTGTTGTGCTAAGGAATCTACTTAAACCTCTACATAATCTACATGATGCTTCTGCTCTTTGCAATTACCTCGAGTCGTTCTACACTCTAAGAAAGCCGGTGGCATCTACAATAAACACATTAGCAGGTGCATTATACAAAGTGTTTTGTGCATCTCCTGATCCAGCTAGCATTGAAATGCGCCAAGcatgttttgattatttgagCCTTGGAGGCGTTTTCTCAAACGGACCAATAGCTCTACTCTCCGGTCTAAATCCTCGTCCACTCAGCTTGGTTCTCCATTTCTTCGCAGTGGCTATATACGGTGTCGGCCGTCTTTTGATACCGTTTCCTTCTCCTAAAAGAATGTGGATCGGAGCTAGACTGATTTCCGGTGCATCAGGTATAATTTTCCCAATTATAAAAGCAGAAGGAGTGAGACAAATGTTTTTTCCAGCAAGTGTGCCAGCATATTACAGAATGCCTCCTATCCATTAA 1593 0.3999 MDYQYILGGIFLASSLAFVFVLYSFGVKKKVTKSGLSSKDVKSNNGYAKLSSENGICLQEVEGETDIVIVGAGVAGAALAYTLGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLLELGLEDCVDEIDAQRVFGYALYKDGKNTKLSYPLENFNADVSGRSFHNGRFIQRMREKASSLPNVKLEQGTVTSLLEENGTIKGVNYKTKSGEVFATKAPLTIVCDGCFSNLRRSLCDPKVEVPSHFVGLVLENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPAGQKLPSLGNGDMAHYLKTVVAPQVPPELYDSFIAAIDKGNIRSMPNKSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLHNLHDASALCNYLESFYTLRKPVASTINTLAGALYKVFCASPDPASIEMRQACFDYLSLGGVFSNGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLIPFPSPKRMWIGARLISGASGIIFPIIKAEGVRQMFFPASVPAYYRMPPIH 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01718 530 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 530 - -
Tsu02g01718 530 Pfam FAD dependent oxidoreductase 66 96 IPR006076 GO:0016491
Tsu02g01718 530 Gene3D - 60 436 IPR036188 -
Tsu02g01718 530 SUPERFAMILY FAD/NAD(P)-binding domain 64 441 IPR036188 -
Tsu02g01718 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 66 88 - -
Tsu02g01718 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 215 230 - -
Tsu02g01718 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 359 - -
Tsu02g01718 530 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 359 375 - -
Tsu02g01718 530 Pfam Squalene epoxidase 215 489 IPR013698 GO:0004506|GO:0016021|GO:0050660
Tsu02g01718 530 PANTHER SQUALENE MONOOXYGENASE 1 530 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01718 Tsu-Chr2 15107128 15110404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01718 22 528 Miscellaneous Gene Families AT1G58440 76.228 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01718 K00511 - gmx:100800329 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01718 02 15107128 15110404 Tsu02g01718 02 15107128 15110404 ECH
Tsu02g01718 02 15107128 15110404 Tsu08g04238 08 60420985 60424541 PCT